SOLTUB.AGRIA.G00000041895

Description : Serine hydroxymethyltransferase

Gene families : OG_02_0007121 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041895
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37

Type	GO Term	Name	Evidence	Source
MF	GO:0000900	mRNA regulatory element binding translation repressor activity	IEA	AHRD
BP	GO:0002082	regulation of oxidative phosphorylation	IEA	AHRD
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005743	mitochondrial inner membrane	IEA	AHRD
CC	GO:0005758	mitochondrial intermembrane space	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005856	cytoskeleton	None	Extended
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006144	purine nucleobase metabolic process	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	None	Extended
BP	GO:0006545	glycine biosynthetic process	None	Extended
BP	GO:0006563	L-serine metabolic process	None	Extended
BP	GO:0006565	L-serine catabolic process	IEA	AHRD
BP	GO:0006575	cellular modified amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006730	one-carbon metabolic process	None	Extended
BP	GO:0006760	folic acid-containing compound metabolic process	None	Extended
BP	GO:0006766	vitamin metabolic process	None	Extended
BP	GO:0006767	water-soluble vitamin metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007623	circadian rhythm	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008187	poly-pyrimidine tract binding	None	Extended
BP	GO:0008219	cell death	None	Extended
MF	GO:0008266	poly(U) RNA binding	IEA	AHRD
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0008284	positive regulation of cell population proliferation	IEA	AHRD
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	cellular amino acid catabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009071	serine family amino acid catabolic process	None	Extended
BP	GO:0009112	nucleobase metabolic process	None	Extended
BP	GO:0009113	purine nucleobase biosynthetic process	IEA	AHRD
BP	GO:0009266	response to temperature stimulus	None	Extended
CC	GO:0009295	nucleoid	None	Extended
BP	GO:0009409	response to cold	IEA	AHRD
CC	GO:0009506	plasmodesma	IEA	AHRD
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IEA	AHRD
CC	GO:0009570	chloroplast stroma	IEA	AHRD
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009626	plant-type hypersensitive response	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009853	photorespiration	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0012501	programmed cell death	None	Extended
CC	GO:0015630	microtubule cytoskeleton	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0016579	protein deubiquitination	None	Extended
MF	GO:0016597	amino acid binding	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019264	glycine biosynthetic process from serine	IEA	AHRD
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0030054	cell junction	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	AHRD
MF	GO:0030371	translation repressor activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0031406	carboxylic acid binding	None	Extended
CC	GO:0031966	mitochondrial membrane	None	Extended
CC	GO:0031970	organelle envelope lumen	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034050	programmed cell death induced by symbiont	None	Extended
BP	GO:0034097	response to cytokine	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034340	response to type I interferon	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035999	tetrahydrofolate interconversion	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042558	pteridine-containing compound metabolic process	None	Extended
CC	GO:0042645	mitochondrial nucleoid	IEA	AHRD
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
BP	GO:0043094	cellular metabolic compound salvage	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043177	organic acid binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043457	regulation of cellular respiration	None	Extended
BP	GO:0043467	regulation of generation of precursor metabolites and energy	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043648	dicarboxylic acid metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044403	biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045087	innate immune response	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046112	nucleobase biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046653	tetrahydrofolate metabolic process	None	Extended
BP	GO:0046655	folic acid metabolic process	IEA	AHRD
BP	GO:0046686	response to cadmium ion	IEA	AHRD
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0048027	mRNA 5'-UTR binding	IEA	AHRD
CC	GO:0048046	apoplast	IEA	AHRD
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0050897	cobalt ion binding	IEA	AHRD
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051259	protein complex oligomerization	None	Extended
BP	GO:0051260	protein homooligomerization	None	Extended
BP	GO:0051262	protein tetramerization	None	Extended
BP	GO:0051289	protein homotetramerization	IEA	AHRD
BP	GO:0051702	biological process involved in interaction with symbiont	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0062125	regulation of mitochondrial gene expression	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
BP	GO:0070129	regulation of mitochondrial translation	IEA	AHRD
CC	GO:0070161	anchoring junction	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0070536	protein K63-linked deubiquitination	IEA	AHRD
CC	GO:0070552	BRISC complex	IEA	AHRD
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
MF	GO:0070905	serine binding	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1903715	regulation of aerobic respiration	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001514	selenocysteine incorporation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002143	tRNA wobble position uridine thiolation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002183	cytoplasmic translational initiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004792	thiosulfate sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006399	tRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006451	translational readthrough	IEP	Predict GO terms from Neighborhoods
BP	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008143	poly(A) binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0008265	Mo-molybdopterin cofactor sulfurase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010193	response to ozone	IEP	Predict GO terms from Neighborhoods
CC	GO:0010494	cytoplasmic stress granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016783	sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016973	poly(A)+ mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0019008	molybdopterin synthase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0019720	Mo-molybdopterin cofactor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032324	molybdopterin cofactor biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032447	protein urmylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034063	stress granule assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034227	tRNA thio-modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042292	URM1 activating enzyme activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043545	molybdopterin cofactor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051189	prosthetic group metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051348	negative regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061604	molybdopterin-synthase sulfurtransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061605	molybdopterin-synthase adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070566	adenylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070717	poly-purine tract binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900259	regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900260	negative regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990823	response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015424	PyrdxlP-dep_Trfase	80	525
IPR039429	SHMT-like_dom	82	470

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SOLTUB.AGRIA.G00000041895

Expression Profile

Co-expression Networks

Functional Annotation