SOLTUB.AGRIA.G00000041933

Description : Tryptophan synthase beta chain 2

Gene families : OG_02_0007119 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041933
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_32

Type	GO Term	Name	Evidence	Source
BP	GO:0000162	tryptophan biosynthetic process	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006568	tryptophan metabolic process	None	Extended
BP	GO:0006576	cellular biogenic amine metabolic process	None	Extended
BP	GO:0006586	indolalkylamine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009072	aromatic amino acid family metabolic process	None	Extended
BP	GO:0009073	aromatic amino acid family biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	cellular biogenic amine biosynthetic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0042435	indole-containing compound biosynthetic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044106	cellular amine metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046219	indolalkylamine biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0052684	L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000221	vacuolar proton-transporting V-type ATPase, V1 domain	IEP	Predict GO terms from Neighborhoods
BP	GO:0001503	ossification	IEP	Predict GO terms from Neighborhoods
CC	GO:0001726	ruffle	IEP	Predict GO terms from Neighborhoods
BP	GO:0003014	renal system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0003091	renal water homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0003096	renal sodium ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0003779	actin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004364	glutathione transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005902	microvillus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006163	purine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006518	peptide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006558	L-phenylalanine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006559	L-phenylalanine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006570	tyrosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006572	tyrosine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006690	icosanoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006692	prostanoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006693	prostaglandin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006749	glutathione metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006814	sodium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006873	cellular ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006885	regulation of pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0007015	actin filament organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007035	vacuolar acidification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007588	excretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0007600	sensory perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0007605	sensory perception of sound	IEP	Predict GO terms from Neighborhoods
BP	GO:0007610	behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0007635	chemosensory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009056	catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009063	cellular amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009259	ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009635	response to herbicide	IEP	Predict GO terms from Neighborhoods
BP	GO:0009636	response to toxic substance	IEP	Predict GO terms from Neighborhoods
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0009757	hexose mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010255	glucose mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010506	regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010639	negative regulation of organelle organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0015078	proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016034	maleylacetoacetate isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016054	organic acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016241	regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
CC	GO:0016323	basolateral plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0016324	apical plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0016328	lateral plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016853	isomerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016859	cis-trans isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019439	aromatic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019693	ribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019898	extrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030003	cellular cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030004	cellular monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030104	water homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030534	adult behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0030641	regulation of cellular pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Predict GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031312	extrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032272	negative regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Predict GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predict GO terms from Neighborhoods
CC	GO:0033180	proton-transporting V-type ATPase, V1 domain	IEP	Predict GO terms from Neighborhoods
BP	GO:0033559	unsaturated fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035812	renal sodium excretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042048	olfactory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0042221	response to chemical	IEP	Predict GO terms from Neighborhoods
CC	GO:0042470	melanosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0042472	inner ear morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042802	identical protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0043603	cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044248	cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046395	carboxylic acid catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0048598	embryonic morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0048770	pigment granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0048871	multicellular organismal homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050077	maleylpyruvate isomerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050877	nervous system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050878	regulation of body fluid levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0050891	multicellular organismal water homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050954	sensory perception of mechanical stimulus	IEP	Predict GO terms from Neighborhoods
MF	GO:0051015	actin filament binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051017	actin filament bundle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051129	negative regulation of cellular component organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051452	intracellular pH reduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0051453	regulation of intracellular pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051693	actin filament capping	IEP	Predict GO terms from Neighborhoods
BP	GO:0055064	chloride ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055075	potassium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055081	anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055083	monovalent inorganic anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061572	actin filament bundle organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070070	proton-transporting V-type ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070071	proton-transporting two-sector ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0072507	divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072521	purine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Predict GO terms from Neighborhoods
BP	GO:0097254	renal tubular secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0097435	supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0098850	extrinsic component of synaptic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098858	actin-based cell projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0120252	hydrocarbon metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0120253	hydrocarbon catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901170	naphthalene catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901575	organic substance catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901879	regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1901880	negative regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902221	erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902222	erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001926	PLP-dep	115	453
IPR006316	Trp_synth_b-like	52	468
IPR036052	Trypto_synt_PLP_dependent	69	466

External Links

No external refs found!

SOLTUB.AGRIA.G00000041933

Expression Profile

Co-expression Networks

Functional Annotation