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  5. SOLTUB.AGRIA.G00000042869

SOLTUB.AGRIA.G00000042869


Description : high mobility group B3


Gene families : OG_02_0018574 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000042869
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_237

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000005526 No alias high mobility group B1 0.5 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005526 No alias high mobility group B1 0.5 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005526 No alias high mobility group B1 0.5 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000910 cytokinesis IEP Predict GO terms from Neighborhoods
BP GO:0001890 placenta development IEP Predict GO terms from Neighborhoods
BP GO:0001934 positive regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0007530 sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007538 primary sex determination IEP Predict GO terms from Neighborhoods
BP GO:0007542 primary sex determination, germ-line IEP Predict GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Predict GO terms from Neighborhoods
BP GO:0010225 response to UV-C IEP Predict GO terms from Neighborhoods
BP GO:0010562 positive regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0018992 germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019100 male germ-line sex determination IEP Predict GO terms from Neighborhoods
BP GO:0019236 response to pheromone IEP Predict GO terms from Neighborhoods
BP GO:0030238 male sex determination IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:0030865 cortical cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031139 positive regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031507 heterochromatin formation IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
CC GO:0032153 cell division site IEP Predict GO terms from Neighborhoods
BP GO:0032204 regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032210 regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0032872 regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032874 positive regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0033044 regulation of chromosome organization IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0040029 epigenetic regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0042327 positive regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0043405 regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043406 positive regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043408 regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043410 positive regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043506 regulation of JUN kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043507 positive regulation of JUN kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Predict GO terms from Neighborhoods
BP GO:0045859 regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045937 positive regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051054 positive regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051347 positive regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051972 regulation of telomerase activity IEP Predict GO terms from Neighborhoods
BP GO:0051973 positive regulation of telomerase activity IEP Predict GO terms from Neighborhoods
BP GO:0060718 chorionic trophoblast cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0070302 regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070304 positive regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070828 heterochromatin organization IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0071902 positive regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0071944 cell periphery IEP Predict GO terms from Neighborhoods
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:1900744 regulation of p38MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1900745 positive regulation of p38MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1904353 regulation of telomere capping IEP Predict GO terms from Neighborhoods
BP GO:1904355 positive regulation of telomere capping IEP Predict GO terms from Neighborhoods
BP GO:1904356 regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:2000278 regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000573 positive regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036910 HMG_box_dom_sf 6 72
IPR009071 HMG_box_dom 6 60
No external refs found!