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  5. SOLTUB.AGRIA.G00000043124

SOLTUB.AGRIA.G00000043124


Description : Rhamnogalacturonate lyase


Gene families : OG_02_0003596 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000043124
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_92


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0005996 monosaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006004 fucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007155 cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0010214 seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0010383 cell wall polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010395 rhamnogalacturonan I metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019318 hexose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045489 pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052325 cell wall pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052546 cell wall pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 230 300
IPR008979 Galactose-bd-like_sf 336 397
IPR013784 Carb-bd-like_fold 249 303
IPR029411 RG-lyase_III 341 396
IPR010325 Rhamnogal_lyase 41 103
No external refs found!