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  5. SOLTUB.AGRIA.G00000043484

SOLTUB.AGRIA.G00000043484


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0004731 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000043484
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_195


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predict GO terms from Neighborhoods
BP GO:0009808 lignin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009809 lignin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009832 plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predict GO terms from Neighborhoods
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predict GO terms from Neighborhoods
BP GO:0042546 cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0046271 phenylpropanoid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046274 lignin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046688 response to copper ion IEP Predict GO terms from Neighborhoods
CC GO:0048226 Casparian strip IEP Predict GO terms from Neighborhoods
MF GO:0052716 hydroquinone:oxygen oxidoreductase activity IEP Predict GO terms from Neighborhoods
BP GO:0080022 primary root development IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 295 343
IPR002885 Pentatricopeptide_repeat 396 446
IPR002885 Pentatricopeptide_repeat 195 238
IPR002885 Pentatricopeptide_repeat 473 499
IPR002885 Pentatricopeptide_repeat 170 194
IPR002885 Pentatricopeptide_repeat 197 231
IPR002885 Pentatricopeptide_repeat 399 425
IPR002885 Pentatricopeptide_repeat 271 295
IPR002885 Pentatricopeptide_repeat 298 331
IPR002885 Pentatricopeptide_repeat 371 397
No external refs found!