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  5. SOLTUB.AGRIA.G00000004908

SOLTUB.AGRIA.G00000004908


Description : Ribosomal RNA small subunit methyltransferase E


Gene families : OG_02_0011699 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004908
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_247


Type GO Term Name Evidence Source
BP GO:0008152 metabolic process IEA AHRD
MF GO:0016740 transferase activity IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predict GO terms from Neighborhoods
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0006163 purine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006753 nucleoside phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006979 response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0009117 nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009141 nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009150 purine ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009225 nucleotide-sugar metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009259 ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010118 stomatal movement IEP Predict GO terms from Neighborhoods
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predict GO terms from Neighborhoods
BP GO:0019637 organophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019693 ribose phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031056 regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Predict GO terms from Neighborhoods
CC GO:0031974 membrane-enclosed lumen IEP Predict GO terms from Neighborhoods
CC GO:0043233 organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0046034 ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0050832 defense response to fungus IEP Predict GO terms from Neighborhoods
BP GO:0051052 regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0070013 intracellular organelle lumen IEP Predict GO terms from Neighborhoods
BP GO:0072521 purine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080135 regulation of cellular response to stress IEP Predict GO terms from Neighborhoods
BP GO:0090332 stomatal closure IEP Predict GO terms from Neighborhoods
BP GO:1990966 ATP generation from poly-ADP-D-ribose IEP Predict GO terms from Neighborhoods
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029028 Alpha/beta_knot_MTases 66 228
IPR006700 RsmE 6 224
IPR006700 RsmE 6 223
IPR015947 PUA-like_sf 3 55
No external refs found!