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  5. SOLTUB.AGRIA.G00000005624

SOLTUB.AGRIA.G00000005624


Description : Calcium-binding EF hand family protein


Gene families : OG_02_0007819 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005624
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_237

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000005505 No alias Calcium-binding EF hand family protein 0.38 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005505 No alias Calcium-binding EF hand family protein 0.38 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005505 No alias Calcium-binding EF hand family protein 0.38 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0005488 binding IEA AHRD
CC GO:0005783 endoplasmic reticulum IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0003862 3-isopropylmalate dehydrogenase activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity IEP Predict GO terms from Neighborhoods
MF GO:0004449 isocitrate dehydrogenase (NAD+) activity IEP Predict GO terms from Neighborhoods
CC GO:0005962 mitochondrial isocitrate dehydrogenase complex (NAD+) IEP Predict GO terms from Neighborhoods
BP GO:0006099 tricarboxylic acid cycle IEP Predict GO terms from Neighborhoods
BP GO:0006102 isocitrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006103 2-oxoglutarate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006289 nucleotide-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0006551 leucine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006734 NADH metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008094 ATP-dependent activity, acting on DNA IEP Predict GO terms from Neighborhoods
BP GO:0009081 branched-chain amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009098 leucine biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0030062 mitochondrial tricarboxylic acid cycle enzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0031047 gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031507 heterochromatin formation IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
BP GO:0040029 epigenetic regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0043648 dicarboxylic acid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0045239 tricarboxylic acid cycle enzyme complex IEP Predict GO terms from Neighborhoods
CC GO:0045242 isocitrate dehydrogenase complex (NAD+) IEP Predict GO terms from Neighborhoods
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Predict GO terms from Neighborhoods
MF GO:0051287 NAD binding IEP Predict GO terms from Neighborhoods
BP GO:0070828 heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0072350 tricarboxylic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0098798 mitochondrial protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:1902652 secondary alcohol metabolic process IEP Predict GO terms from Neighborhoods
CC GO:1990204 oxidoreductase complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 289 348
IPR011992 EF-hand-dom_pair 200 355
IPR002048 EF_hand_dom 201 222
IPR011992 EF-hand-dom_pair 118 226
No external refs found!