SOLTUB.AGRIA.G00000005763


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_02_0007842 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005763
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_51

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000005786 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005786 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005786 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.2 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA AHRD
MF GO:0003727 single-stranded RNA binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006952 defense response IEA AHRD
BP GO:0007154 cell communication IEA AHRD
BP GO:0008219 cell death IEA AHRD
BP GO:0009693 ethylene biosynthetic process IEA AHRD
BP GO:0010035 response to inorganic substance IEA AHRD
BP GO:0010150 leaf senescence IEA AHRD
BP GO:0010628 positive regulation of gene expression IEA AHRD
BP GO:0010629 negative regulation of gene expression IEA AHRD
CC GO:0014069 postsynaptic density IEA AHRD
CC GO:0035770 ribonucleoprotein granule IEA AHRD
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEA AHRD
MF GO:0036002 pre-mRNA binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
CC GO:0043005 neuron projection IEA AHRD
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEA AHRD
BP GO:0048513 animal organ development IEA AHRD
BP GO:0051028 mRNA transport IEA AHRD
MF GO:0051033 RNA transmembrane transporter activity IEA AHRD
BP GO:0051052 regulation of DNA metabolic process IEA AHRD
BP GO:0065008 regulation of biological quality IEA AHRD
BP GO:0071396 cellular response to lipid IEA AHRD
BP GO:0071495 cellular response to endogenous stimulus IEA AHRD
CC GO:0140513 nuclear protein-containing complex IEA AHRD
MF GO:0140666 annealing activity IEA AHRD
BP GO:1901701 cellular response to oxygen-containing compound IEA AHRD
BP GO:1903312 negative regulation of mRNA metabolic process IEA AHRD
CC GO:1990124 messenger ribonucleoprotein complex IEA AHRD
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000082 G1/S transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0000132 establishment of mitotic spindle orientation IEP Predict GO terms from Neighborhoods
BP GO:0000209 protein polyubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0000339 RNA cap binding IEP Predict GO terms from Neighborhoods
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Predict GO terms from Neighborhoods
CC GO:0000793 condensed chromosome IEP Predict GO terms from Neighborhoods
CC GO:0000932 P-body IEP Predict GO terms from Neighborhoods
BP GO:0001662 behavioral fear response IEP Predict GO terms from Neighborhoods
BP GO:0002209 behavioral defense response IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0003779 actin binding IEP Predict GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
CC GO:0005845 mRNA cap binding complex IEP Predict GO terms from Neighborhoods
CC GO:0005938 cell cortex IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006508 proteolysis IEP Predict GO terms from Neighborhoods
MF GO:0008134 transcription factor binding IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008238 exopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008239 dipeptidyl-peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0008356 asymmetric cell division IEP Predict GO terms from Neighborhoods
BP GO:0009790 embryo development IEP Predict GO terms from Neighborhoods
BP GO:0009792 embryo development ending in birth or egg hatching IEP Predict GO terms from Neighborhoods
BP GO:0010070 zygote asymmetric cell division IEP Predict GO terms from Neighborhoods
CC GO:0010494 cytoplasmic stress granule IEP Predict GO terms from Neighborhoods
BP GO:0010927 cellular component assembly involved in morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0016281 eukaryotic translation initiation factor 4F complex IEP Predict GO terms from Neighborhoods
CC GO:0016442 RISC complex IEP Predict GO terms from Neighborhoods
BP GO:0017148 negative regulation of translation IEP Predict GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0030029 actin filament-based process IEP Predict GO terms from Neighborhoods
BP GO:0030036 actin cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0030324 lung development IEP Predict GO terms from Neighborhoods
MF GO:0030674 protein-macromolecule adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0031033 myosin filament organization IEP Predict GO terms from Neighborhoods
BP GO:0031034 myosin filament assembly IEP Predict GO terms from Neighborhoods
CC GO:0031332 RNAi effector complex IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0031370 eukaryotic initiation factor 4G binding IEP Predict GO terms from Neighborhoods
CC GO:0031430 M band IEP Predict GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
CC GO:0031463 Cul3-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
CC GO:0031674 I band IEP Predict GO terms from Neighborhoods
BP GO:0031960 response to corticosteroid IEP Predict GO terms from Neighborhoods
BP GO:0032006 regulation of TOR signaling IEP Predict GO terms from Neighborhoods
BP GO:0032008 positive regulation of TOR signaling IEP Predict GO terms from Neighborhoods
CC GO:0032154 cleavage furrow IEP Predict GO terms from Neighborhoods
BP GO:0032886 regulation of microtubule-based process IEP Predict GO terms from Neighborhoods
BP GO:0032887 regulation of spindle elongation IEP Predict GO terms from Neighborhoods
BP GO:0032888 regulation of mitotic spindle elongation IEP Predict GO terms from Neighborhoods
CC GO:0033391 chromatoid body IEP Predict GO terms from Neighborhoods
BP GO:0033500 carbohydrate homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0033555 multicellular organismal response to stress IEP Predict GO terms from Neighborhoods
BP GO:0034059 response to anoxia IEP Predict GO terms from Neighborhoods
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0034518 RNA cap binding complex IEP Predict GO terms from Neighborhoods
CC GO:0036477 somatodendritic compartment IEP Predict GO terms from Neighborhoods
BP GO:0040001 establishment of mitotic spindle localization IEP Predict GO terms from Neighborhoods
BP GO:0042593 glucose homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0042596 fear response IEP Predict GO terms from Neighborhoods
BP GO:0043065 positive regulation of apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0044770 cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:0044772 mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:0044843 cell cycle G1/S phase transition IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0045202 synapse IEP Predict GO terms from Neighborhoods
BP GO:0045596 negative regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045664 regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045665 negative regulation of neuron differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045931 positive regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0048545 response to steroid hormone IEP Predict GO terms from Neighborhoods
BP GO:0050687 negative regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050804 modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Predict GO terms from Neighborhoods
BP GO:0051246 regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051293 establishment of spindle localization IEP Predict GO terms from Neighborhoods
BP GO:0051294 establishment of spindle orientation IEP Predict GO terms from Neighborhoods
BP GO:0051384 response to glucocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0051603 proteolysis involved in protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051653 spindle localization IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0060090 molecular adaptor activity IEP Predict GO terms from Neighborhoods
MF GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
MF GO:0070012 oligopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0071383 cellular response to steroid hormone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071384 cellular response to corticosteroid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071385 cellular response to glucocorticoid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071548 response to dexamethasone IEP Predict GO terms from Neighborhoods
BP GO:0071549 cellular response to dexamethasone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071688 striated muscle myosin thick filament assembly IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0097602 cullin family protein binding IEP Predict GO terms from Neighborhoods
CC GO:0098978 glutamatergic synapse IEP Predict GO terms from Neighborhoods
BP GO:0099170 postsynaptic modulation of chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0099177 regulation of trans-synaptic signaling IEP Predict GO terms from Neighborhoods
CC GO:0099522 cytosolic region IEP Predict GO terms from Neighborhoods
CC GO:0099524 postsynaptic cytosol IEP Predict GO terms from Neighborhoods
BP GO:0099547 regulation of translation at synapse, modulating synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0099578 regulation of translation at postsynapse, modulating synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0140243 regulation of translation at synapse IEP Predict GO terms from Neighborhoods
BP GO:0140245 regulation of translation at postsynapse IEP Predict GO terms from Neighborhoods
MF GO:0140297 DNA-binding transcription factor binding IEP Predict GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1901654 response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1901655 cellular response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1902235 regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1902237 positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:1902850 microtubule cytoskeleton organization involved in mitosis IEP Predict GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903432 regulation of TORC1 signaling IEP Predict GO terms from Neighborhoods
BP GO:1904035 regulation of epithelial cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1904037 positive regulation of epithelial cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:1904263 positive regulation of TORC1 signaling IEP Predict GO terms from Neighborhoods
BP GO:1905897 regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1905898 positive regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:2000674 regulation of type B pancreatic cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:2000676 positive regulation of type B pancreatic cell apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:2001233 regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001235 positive regulation of apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001242 regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2001244 positive regulation of intrinsic apoptotic signaling pathway IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR035979 RBD_domain_sf 74 159
IPR035979 RBD_domain_sf 164 275
IPR000504 RRM_dom 83 150
IPR000504 RRM_dom 174 230
No external refs found!