SOLTUB.AGRIA.G00000005838

Description : LSD1 zinc finger family protein

Gene families : OG_02_0012718 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005838
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_82

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002683	negative regulation of immune system process	None	Extended
BP	GO:0002684	positive regulation of immune system process	None	Extended
BP	GO:0002831	regulation of response to biotic stimulus	None	Extended
BP	GO:0002832	negative regulation of response to biotic stimulus	None	Extended
BP	GO:0002833	positive regulation of response to biotic stimulus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0010363	regulation of plant-type hypersensitive response	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0010942	positive regulation of cell death	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	None	Extended
BP	GO:0031349	positive regulation of defense response	None	Extended
BP	GO:0032101	regulation of response to external stimulus	None	Extended
BP	GO:0032102	negative regulation of response to external stimulus	None	Extended
BP	GO:0032103	positive regulation of response to external stimulus	None	Extended
BP	GO:0034051	negative regulation of plant-type hypersensitive response	IEA	AHRD
BP	GO:0034052	positive regulation of plant-type hypersensitive response	IEA	AHRD
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043068	positive regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045089	positive regulation of innate immune response	None	Extended
BP	GO:0045595	regulation of cell differentiation	IEA	AHRD
BP	GO:0045824	negative regulation of innate immune response	None	Extended
BP	GO:0045927	positive regulation of growth	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050777	negative regulation of immune response	None	Extended
BP	GO:0050778	positive regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090322	regulation of superoxide metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1900407	regulation of cellular response to oxidative stress	None	Extended
BP	GO:1901031	regulation of response to reactive oxygen species	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902882	regulation of response to oxidative stress	None	Extended
BP	GO:2000121	regulation of removal of superoxide radicals	IEA	AHRD
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000220	vacuolar proton-transporting V-type ATPase, V0 domain	IEP	Predict GO terms from Neighborhoods
CC	GO:0000329	fungal-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0000347	THO complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000445	THO complex part of transcription export complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000781	chromosome, telomeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:0001934	positive regulation of protein phosphorylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005776	autophagosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005856	cytoskeleton	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006928	obsolete movement of cell or subcellular component	IEP	Predict GO terms from Neighborhoods
BP	GO:0007190	activation of adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0008361	regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0010267	ta-siRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0010469	regulation of signaling receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010499	proteasomal ubiquitin-independent protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0015630	microtubule cytoskeleton	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019209	kinase activator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019774	proteasome core complex, beta-subunit complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019897	extrinsic component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0030295	protein kinase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030422	siRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Predict GO terms from Neighborhoods
BP	GO:0030833	regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030838	positive regulation of actin filament polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031152	aggregation involved in sorocarp development	IEP	Predict GO terms from Neighborhoods
CC	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031252	cell leading edge	IEP	Predict GO terms from Neighborhoods
BP	GO:0031279	regulation of cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031281	positive regulation of cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031334	positive regulation of protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031505	fungal-type cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031929	TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0031930	mitochondria-nucleus signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0031931	TORC1 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031932	TORC2 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031983	vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032006	regulation of TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032008	positive regulation of TOR signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0032092	positive regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032147	activation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032148	activation of protein kinase B activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032271	regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032273	positive regulation of protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain	IEP	Predict GO terms from Neighborhoods
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Predict GO terms from Neighborhoods
BP	GO:0033674	positive regulation of kinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0034399	nuclear periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:0034504	protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0034774	secretory granule lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0038201	TOR complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0038202	TORC1 signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0038203	TORC2 signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0043087	regulation of GTPase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043327	chemotaxis to cAMP	IEP	Predict GO terms from Neighborhoods
BP	GO:0043393	regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043519	regulation of myosin II filament organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043520	regulation of myosin II filament assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0043539	protein serine/threonine kinase activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044417	translocation of molecules into host	IEP	Predict GO terms from Neighborhoods
BP	GO:0045761	regulation of adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045762	positive regulation of adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045793	positive regulation of cell size	IEP	Predict GO terms from Neighborhoods
BP	GO:0045860	positive regulation of protein kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046626	regulation of insulin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046628	positive regulation of insulin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046784	viral mRNA export from host cell nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0048571	long-day photoperiodism	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050730	regulation of peptidyl-tyrosine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050731	positive regulation of peptidyl-tyrosine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050764	regulation of phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050765	negative regulation of phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050920	regulation of chemotaxis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050923	regulation of negative chemotaxis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051099	positive regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051339	regulation of lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051347	positive regulation of transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051349	positive regulation of lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051701	biological process involved in interaction with host	IEP	Predict GO terms from Neighborhoods
BP	GO:0051896	regulation of protein kinase B signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0051897	positive regulation of protein kinase B signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0060205	cytoplasmic vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0061586	positive regulation of transcription by transcription factor localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0070003	threonine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070918	small regulatory ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0071852	fungal-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0080091	regulation of raffinose metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0098852	lytic vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0099120	socially cooperative development	IEP	Predict GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900076	regulation of cellular response to insulin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900078	positive regulation of cellular response to insulin stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900088	regulation of inositol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900091	regulation of raffinose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900120	regulation of receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1900122	positive regulation of receptor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903667	regulation of chemorepellent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903669	positive regulation of chemorepellent activity	IEP	Predict GO terms from Neighborhoods
CC	GO:1904813	ficolin-1-rich granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:2000273	positive regulation of signaling receptor activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR005735	Znf_LSD1	81	111
IPR005735	Znf_LSD1	43	73
IPR005735	Znf_LSD1	4	32
IPR005735	Znf_LSD1	7	30
IPR005735	Znf_LSD1	46	70
IPR005735	Znf_LSD1	84	108

External Links

No external refs found!

SOLTUB.AGRIA.G00000005838

Expression Profile

Co-expression Networks

Functional Annotation