SOLTUB.AGRIA.G00000005965

Description : Nucleic acid-binding, OB-fold

Gene families : OG_02_0000124 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005965
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000042756	No alias	Nucleic acid-binding, OB-fold	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042756	No alias	Nucleic acid-binding, OB-fold	0.02	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042756	No alias	Nucleic acid-binding, OB-fold	0.02	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043229	intracellular organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000912	assembly of actomyosin apparatus involved in cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000914	phragmoplast assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0002021	response to dietary excess	IEP	Predict GO terms from Neighborhoods
MF	GO:0004499	N,N-dimethylaniline monooxygenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005819	spindle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007349	cellularization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008587	imaginal disc-derived wing margin morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009524	phragmoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0009556	microsporogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009574	preprophase band	IEP	Predict GO terms from Neighborhoods
BP	GO:0010245	radial microtubular system formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010342	endosperm cellularization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010581	regulation of starch biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018230	peptidyl-L-cysteine S-palmitoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018231	peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine	IEP	Predict GO terms from Neighborhoods
BP	GO:0018345	protein palmitoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019706	protein-cysteine S-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019707	protein-cysteine S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019825	oxygen binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022416	chaeta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0031063	regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031065	positive regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032506	cytokinetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033321	homomethionine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033506	glucosinolate biosynthetic process from homomethionine	IEP	Predict GO terms from Neighborhoods
BP	GO:0034293	sexual sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042461	photoreceptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0043543	protein acylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043934	sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045444	fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045570	regulation of imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0045572	positive regulation of imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0045747	positive regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046329	negative regulation of JNK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0048236	plant-type sporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050872	white fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051321	meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0060612	adipose tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060613	fat pad development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061448	connective tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0070026	nitric oxide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070050	neuron cellular homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071783	endoplasmic reticulum cisternal network organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071784	endoplasmic reticulum cisternal network assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0080102	3-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080103	4-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080104	5-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080105	6-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080106	7-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080107	8-methylthiopropyl glucosinolate S-oxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090207	regulation of triglyceride metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090312	positive regulation of protein deacetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0097255	R2TP complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0102802	thebaine 6-O-demethylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102805	codeine O-demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902407	assembly of actomyosin apparatus involved in mitotic cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902410	mitotic cytokinetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003871	DUF223	42	107
IPR031657	REPA_OB_2	138	226
IPR012340	NA-bd_OB-fold	264	434
IPR013955	Rep_factor-A_C	287	403
IPR012340	NA-bd_OB-fold	128	234
IPR012340	NA-bd_OB-fold	3	110

External Links

No external refs found!

SOLTUB.AGRIA.G00000005965

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation