SOLTUB.AGRIA.G00000006113

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG_02_0002844 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006113
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_36

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0001763	morphogenesis of a branching structure	None	Extended
BP	GO:0002009	morphogenesis of an epithelium	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005681	spliceosomal complex	IEA	AHRD
CC	GO:0005789	endoplasmic reticulum membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009790	embryo development	IEA	AHRD
BP	GO:0009887	animal organ morphogenesis	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043529	GET complex	IEA	AHRD
MF	GO:0043621	protein self-association	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	IEA	AHRD
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048729	tissue morphogenesis	None	Extended
BP	GO:0048767	root hair elongation	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0061138	morphogenesis of a branching epithelium	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140534	endoplasmic reticulum protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0000118	histone deacetylase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000123	histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0000149	SNARE binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000183	rDNA heterochromatin formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000776	kinetochore	IEP	Predict GO terms from Neighborhoods
CC	GO:0000812	Swr1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001207	obsolete histone displacement	IEP	Predict GO terms from Neighborhoods
BP	GO:0001779	natural killer cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001818	negative regulation of cytokine production	IEP	Predict GO terms from Neighborhoods
BP	GO:0002521	leukocyte differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003688	DNA replication origin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004402	histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004468	lysine N-acetyltransferase activity, acting on acetyl phosphate as donor	IEP	Predict GO terms from Neighborhoods
MF	GO:0005484	SNAP receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0005666	RNA polymerase III complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005705	polytene chromosome interband	IEP	Predict GO terms from Neighborhoods
CC	GO:0005801	cis-Golgi network	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006906	vesicle fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006978	DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator	IEP	Predict GO terms from Neighborhoods
BP	GO:0007399	nervous system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0007549	dosage compensation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008080	N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008284	positive regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009047	dosage compensation by hyperactivation of X chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0009996	negative regulation of cell fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010165	response to X-ray	IEP	Predict GO terms from Neighborhoods
BP	GO:0010453	regulation of cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0010454	negative regulation of cell fate commitment	IEP	Predict GO terms from Neighborhoods
MF	GO:0010485	H4 histone acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010508	positive regulation of autophagy	IEP	Predict GO terms from Neighborhoods
CC	GO:0012507	ER to Golgi transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0016239	positive regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016241	regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
CC	GO:0016363	nuclear matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0016456	X chromosome located dosage compensation complex, transcription activating	IEP	Predict GO terms from Neighborhoods
BP	GO:0030098	lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030101	natural killer cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030174	regulation of DNA-templated DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030330	DNA damage response, signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
CC	GO:0030658	transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030662	coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031098	stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0031201	SNARE complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031248	protein acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031507	heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0031902	late endosome membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032355	response to estradiol	IEP	Predict GO terms from Neighborhoods
BP	GO:0032663	regulation of interleukin-2 production	IEP	Predict GO terms from Neighborhoods
BP	GO:0032703	negative regulation of interleukin-2 production	IEP	Predict GO terms from Neighborhoods
CC	GO:0032777	Piccolo NuA4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032880	regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0034502	protein localization to chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0034614	cellular response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:0034728	nucleosome organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035065	regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035066	positive regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0035097	histone methyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0035267	NuA4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0036409	histone H3-K14 acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042127	regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042659	regulation of cell fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Predict GO terms from Neighborhoods
BP	GO:0042772	DNA damage response, signal transduction resulting in transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0042981	regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043066	negative regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043069	negative regulation of programmed cell death	IEP	Predict GO terms from Neighborhoods
CC	GO:0043189	H4/H2A histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0043274	phospholipase binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043424	protein histidine kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043486	histone exchange	IEP	Predict GO terms from Neighborhoods
BP	GO:0043523	regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043524	negative regulation of neuron apoptotic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043966	histone H3 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043967	histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043981	histone H4-K5 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043982	histone H4-K8 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043983	histone H4-K12 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043984	histone H4-K16 acetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043995	histone acetyltransferase activity (H4-K5 specific)	IEP	Predict GO terms from Neighborhoods
MF	GO:0043996	histone acetyltransferase activity (H4-K8 specific)	IEP	Predict GO terms from Neighborhoods
BP	GO:0044154	histone H3-K14 acetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0044545	NSL complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0044665	MLL1/2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045637	regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045639	positive regulation of myeloid cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045646	regulation of erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045648	positive regulation of erythrocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045740	positive regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
CC	GO:0046536	dosage compensation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0046649	lymphocyte activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046677	response to antibiotic	IEP	Predict GO terms from Neighborhoods
MF	GO:0046972	histone acetyltransferase activity (H4-K16 specific)	IEP	Predict GO terms from Neighborhoods
BP	GO:0048167	regulation of synaptic plasticity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050708	regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050807	regulation of synapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051091	positive regulation of DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051604	protein maturation	IEP	Predict GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0060341	regulation of cellular localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0060548	negative regulation of cell death	IEP	Predict GO terms from Neighborhoods
BP	GO:0061025	membrane fusion	IEP	Predict GO terms from Neighborhoods
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070003	threonine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070301	cellular response to hydrogen peroxide	IEP	Predict GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0070775	H3 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070828	heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071168	protein localization to chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0071339	MLL1 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071392	cellular response to estradiol stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071479	cellular response to ionizing radiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071481	cellular response to X-ray	IEP	Predict GO terms from Neighborhoods
CC	GO:0071817	MMXD complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0072091	regulation of stem cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0072331	signal transduction by p53 class mediator	IEP	Predict GO terms from Neighborhoods
CC	GO:0072487	MSL complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0072708	response to sorbitol	IEP	Predict GO terms from Neighborhoods
BP	GO:0072710	response to hydroxyurea	IEP	Predict GO terms from Neighborhoods
BP	GO:0072716	response to actinomycin D	IEP	Predict GO terms from Neighborhoods
BP	GO:0072720	response to dithiothreitol	IEP	Predict GO terms from Neighborhoods
BP	GO:0072739	response to anisomycin	IEP	Predict GO terms from Neighborhoods
BP	GO:0090174	organelle membrane fusion	IEP	Predict GO terms from Neighborhoods
BP	GO:0090239	regulation of histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090240	positive regulation of histone H4 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090398	cellular senescence	IEP	Predict GO terms from Neighborhoods
CC	GO:0090734	site of DNA damage	IEP	Predict GO terms from Neighborhoods
CC	GO:0097346	INO80-type complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0097361	CIA complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0097428	protein maturation by iron-sulfur cluster transfer	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0099174	regulation of presynapse organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0140064	peptide crotonyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140068	histone crotonyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0140718	facultative heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901215	negative regulation of neuron death	IEP	Predict GO terms from Neighborhoods
BP	GO:1901983	regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901985	positive regulation of protein acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902033	regulation of hematopoietic stem cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902035	positive regulation of hematopoietic stem cell proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:1902493	acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902562	H4 histone acetyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903131	mononuclear cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903706	regulation of hemopoiesis	IEP	Predict GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990188	euchromatin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000331	regulation of terminal button organization	IEP	Predict GO terms from Neighborhoods
BP	GO:2000648	positive regulation of stem cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000756	regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000758	positive regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000819	regulation of nucleotide-excision repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2000873	regulation of histone H4 acetylation involved in response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	344	433
IPR035979	RBD_domain_sf	221	309
IPR028945	Get1	26	141
IPR000504	RRM_dom	233	295
IPR000504	RRM_dom	349	416

External Links

No external refs found!

SOLTUB.AGRIA.G00000006113

Expression Profile

Co-expression Networks

Functional Annotation