SOLTUB.AGRIA.G00000006167

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0009811 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006167
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_175

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000024857	No alias	Pentatricopeptide repeat-containing protein	0.07	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000024857	No alias	Pentatricopeptide repeat-containing protein	0.07	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000024857	No alias	Pentatricopeptide repeat-containing protein	0.07	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0000963	mitochondrial RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000966	RNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006914	autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
MF	GO:0009975	cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010467	gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016554	cytidine to uridine editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016556	mRNA modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0061919	process utilizing autophagic mechanism	IEP	Predict GO terms from Neighborhoods
BP	GO:0080156	mitochondrial mRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0090615	mitochondrial mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0090617	mitochondrial mRNA 5'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0140053	mitochondrial gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:1900864	mitochondrial RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1900865	chloroplast RNA modification	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	303	328
IPR002885	Pentatricopeptide_repeat	549	573
IPR002885	Pentatricopeptide_repeat	475	497
IPR002885	Pentatricopeptide_repeat	685	710
IPR002885	Pentatricopeptide_repeat	615	644
IPR002885	Pentatricopeptide_repeat	195	222
IPR002885	Pentatricopeptide_repeat	195	226
IPR002885	Pentatricopeptide_repeat	371	402
IPR002885	Pentatricopeptide_repeat	303	330
IPR002885	Pentatricopeptide_repeat	615	647
IPR002885	Pentatricopeptide_repeat	856	887
IPR002885	Pentatricopeptide_repeat	809	861
IPR002885	Pentatricopeptide_repeat	366	415

External Links

No external refs found!

SOLTUB.AGRIA.G00000006167

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation