SOLTUB.AGRIA.G00000006214

Description : GATA transcription factor

Gene families : OG_02_0012772 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006214
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_61

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0001216	DNA-binding transcription activator activity	None	Extended
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0007623	circadian rhythm	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	None	Extended
BP	GO:0009845	seed germination	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	IEA	AHRD
BP	GO:0009934	regulation of meristem structural organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040034	regulation of development, heterochronic	None	Extended
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0048366	leaf development	None	Extended
BP	GO:0048437	floral organ development	IEA	AHRD
BP	GO:0048506	regulation of timing of meristematic phase transition	None	Extended
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEA	AHRD
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048825	cotyledon development	IEA	AHRD
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905177	tracheary element differentiation	IEA	AHRD
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	IEP	Predict GO terms from Neighborhoods
MF	GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004371	glycerone kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006766	vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006768	biotin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006790	sulfur compound metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008710	8-amino-7-oxononanoate synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009102	biotin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009110	vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009270	response to humidity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009409	response to cold	IEP	Predict GO terms from Neighborhoods
BP	GO:0009415	response to water	IEP	Predict GO terms from Neighborhoods
BP	GO:0009631	cold acclimation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009913	epidermal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010216	maintenance of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010377	guard cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0010444	guard mother cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019405	alditol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019563	glycerol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030855	epithelial cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031057	negative regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031060	regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031061	negative regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031539	positive regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031542	positive regulation of anthocyanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031624	ubiquitin conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031936	obsolete negative regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
MF	GO:0032451	demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034059	response to anoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:0035510	DNA dealkylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0035514	DNA demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0043076	megasporocyte nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0043078	polar nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044281	small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044390	ubiquitin-like protein conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045165	cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0046164	alcohol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046174	polyol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046620	regulation of organ growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0046621	negative regulation of organ growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0047324	phosphoenolpyruvate-glycerone phosphotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048640	negative regulation of developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0050826	response to freezing	IEP	Predict GO terms from Neighborhoods
BP	GO:0051094	positive regulation of developmental process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051747	cytosine C-5 DNA demethylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051782	negative regulation of cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051865	protein autoubiquitination	IEP	Predict GO terms from Neighborhoods
BP	GO:0061085	regulation of histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061086	negative regulation of histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070417	cellular response to cold	IEP	Predict GO terms from Neighborhoods
BP	GO:0070988	demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071497	cellular response to freezing	IEP	Predict GO terms from Neighborhoods
BP	GO:0080111	DNA demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090547	response to low humidity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900057	positive regulation of leaf senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000038	regulation of stomatal complex development	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	189	223

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SOLTUB.AGRIA.G00000006214

Expression Profile

Co-expression Networks

Functional Annotation