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  5. SOLTUB.AGRIA.G00000006787

SOLTUB.AGRIA.G00000006787


Description : tRNA N6-adenosine threonylcarbamoyltransferase


Gene families : OG_02_0012847 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006787
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_37


Type GO Term Name Evidence Source
CC GO:0000408 EKC/KEOPS complex IEA AHRD
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
CC GO:0016607 nuclear speck IEA AHRD
BP GO:0045948 positive regulation of translational initiation IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
MF GO:0061711 N(6)-L-threonylcarbamoyladenine synthase activity IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP Predict GO terms from Neighborhoods
MF GO:0000217 DNA secondary structure binding IEP Predict GO terms from Neighborhoods
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0000387 spliceosomal snRNP assembly IEP Predict GO terms from Neighborhoods
MF GO:0000400 four-way junction DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000741 karyogamy IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
MF GO:0000976 transcription cis-regulatory region binding IEP Predict GO terms from Neighborhoods
MF GO:0001067 transcription regulatory region nucleic acid binding IEP Predict GO terms from Neighborhoods
BP GO:0002183 cytoplasmic translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0003006 developmental process involved in reproduction IEP Predict GO terms from Neighborhoods
BP GO:0003007 heart morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003690 double-stranded DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0003727 single-stranded RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004816 asparagine-tRNA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0005524 ATP binding IEP Predict GO terms from Neighborhoods
CC GO:0005681 spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005682 U5 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005683 U7 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005684 U2-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005685 U1 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005686 U2 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005687 U4 snRNP IEP Predict GO terms from Neighborhoods
CC GO:0005689 U12-type spliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0005697 telomerase holoenzyme complex IEP Predict GO terms from Neighborhoods
CC GO:0005700 polytene chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005829 cytosol IEP Predict GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006337 nucleosome disassembly IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0006351 DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0006366 transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0006376 mRNA splice site selection IEP Predict GO terms from Neighborhoods
BP GO:0006413 translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predict GO terms from Neighborhoods
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0006479 protein methylation IEP Predict GO terms from Neighborhoods
BP GO:0006509 membrane protein ectodomain proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0006997 nucleus organization IEP Predict GO terms from Neighborhoods
BP GO:0007281 germ cell development IEP Predict GO terms from Neighborhoods
BP GO:0007283 spermatogenesis IEP Predict GO terms from Neighborhoods
BP GO:0007379 segment specification IEP Predict GO terms from Neighborhoods
BP GO:0007406 negative regulation of neuroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0007411 axon guidance IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
BP GO:0007447 imaginal disc pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0007450 dorsal/ventral pattern formation, imaginal disc IEP Predict GO terms from Neighborhoods
BP GO:0007517 muscle organ development IEP Predict GO terms from Neighborhoods
BP GO:0007617 mating behavior IEP Predict GO terms from Neighborhoods
BP GO:0007619 courtship behavior IEP Predict GO terms from Neighborhoods
BP GO:0008049 male courtship behavior IEP Predict GO terms from Neighborhoods
MF GO:0008135 translation factor activity, RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
BP GO:0008213 protein alkylation IEP Predict GO terms from Neighborhoods
BP GO:0008283 cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008285 negative regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0008406 gonad development IEP Predict GO terms from Neighborhoods
BP GO:0008586 imaginal disc-derived wing vein morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0008587 imaginal disc-derived wing margin morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009756 carbohydrate mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0009846 pollen germination IEP Predict GO terms from Neighborhoods
BP GO:0009880 embryonic pattern specification IEP Predict GO terms from Neighborhoods
BP GO:0009886 post-embryonic animal morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009887 animal organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009952 anterior/posterior pattern specification IEP Predict GO terms from Neighborhoods
BP GO:0009953 dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010182 sugar mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010197 polar nucleus fusion IEP Predict GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010569 regulation of double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010721 negative regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0014017 neuroblast fate commitment IEP Predict GO terms from Neighborhoods
BP GO:0014855 striated muscle cell proliferation IEP Predict GO terms from Neighborhoods
CC GO:0015030 Cajal body IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
MF GO:0016874 ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predict GO terms from Neighborhoods
MF GO:0017076 purine nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0019098 reproductive behavior IEP Predict GO terms from Neighborhoods
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0022008 neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030334 regulation of cell migration IEP Predict GO terms from Neighborhoods
BP GO:0030336 negative regulation of cell migration IEP Predict GO terms from Neighborhoods
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
MF GO:0030554 adenyl nucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0031175 neuron projection development IEP Predict GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0032553 ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032555 purine ribonucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0032559 adenyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0032984 protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0032986 protein-DNA complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0032989 cellular component morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0032990 cell part morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0033002 muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0033119 negative regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033619 membrane protein proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0034097 response to cytokine IEP Predict GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0034709 methylosome IEP Predict GO terms from Neighborhoods
CC GO:0034719 SMN-Sm protein complex IEP Predict GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Predict GO terms from Neighborhoods
CC GO:0035060 brahma complex IEP Predict GO terms from Neighborhoods
BP GO:0035222 wing disc pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0035239 tube morphogenesis IEP Predict GO terms from Neighborhoods
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0040013 negative regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0042063 gliogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042221 response to chemical IEP Predict GO terms from Neighborhoods
MF GO:0043021 ribonucleoprotein complex binding IEP Predict GO terms from Neighborhoods
BP GO:0043038 amino acid activation IEP Predict GO terms from Neighborhoods
BP GO:0043039 tRNA aminoacylation IEP Predict GO terms from Neighborhoods
BP GO:0043065 positive regulation of apoptotic process IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043230 extracellular organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043484 regulation of RNA splicing IEP Predict GO terms from Neighborhoods
MF GO:0043565 sequence-specific DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
CC GO:0044530 supraspliceosomal complex IEP Predict GO terms from Neighborhoods
CC GO:0045121 membrane raft IEP Predict GO terms from Neighborhoods
BP GO:0045165 cell fate commitment IEP Predict GO terms from Neighborhoods
MF GO:0045182 translation regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0045495 pole plasm IEP Predict GO terms from Neighborhoods
BP GO:0045596 negative regulation of cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045739 positive regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0045893 positive regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0045911 positive regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045924 regulation of female receptivity IEP Predict GO terms from Neighborhoods
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048190 wing disc dorsal/ventral pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0048232 male gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0048284 organelle fusion IEP Predict GO terms from Neighborhoods
BP GO:0048513 animal organ development IEP Predict GO terms from Neighborhoods
BP GO:0048514 blood vessel morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048519 negative regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048523 negative regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048568 embryonic organ development IEP Predict GO terms from Neighborhoods
BP GO:0048812 neuron projection morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048813 dendrite morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048844 artery morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048858 cell projection morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050684 regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050686 negative regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050767 regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050768 negative regulation of neurogenesis IEP Predict GO terms from Neighborhoods
BP GO:0051054 positive regulation of DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051252 regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051253 negative regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051348 negative regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051960 regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0051961 negative regulation of nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0060038 cardiac muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0060179 male mating behavior IEP Predict GO terms from Neighborhoods
BP GO:0060180 female mating behavior IEP Predict GO terms from Neighborhoods
BP GO:0060284 regulation of cell development IEP Predict GO terms from Neighborhoods
BP GO:0060977 coronary vasculature morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0060982 coronary artery morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061061 muscle structure development IEP Predict GO terms from Neighborhoods
CC GO:0061574 ASAP complex IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0065010 extracellular membrane-bounded organelle IEP Predict GO terms from Neighborhoods
MF GO:0070034 telomerase RNA binding IEP Predict GO terms from Neighborhoods
CC GO:0070062 extracellular exosome IEP Predict GO terms from Neighborhoods
BP GO:0070555 response to interleukin-1 IEP Predict GO terms from Neighborhoods
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predict GO terms from Neighborhoods
MF GO:0070990 snRNP binding IEP Predict GO terms from Neighborhoods
CC GO:0071004 U2-type prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071005 U2-type precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071007 U2-type catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071010 prespliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071011 precatalytic spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071013 catalytic step 2 spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0071204 histone pre-mRNA 3'end processing complex IEP Predict GO terms from Neighborhoods
MF GO:0071208 histone pre-mRNA DCP binding IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071345 cellular response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071347 cellular response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0097485 neuron projection guidance IEP Predict GO terms from Neighborhoods
CC GO:0097525 spliceosomal snRNP complex IEP Predict GO terms from Neighborhoods
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0097659 nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
CC GO:0098857 membrane microdomain IEP Predict GO terms from Neighborhoods
BP GO:0120036 plasma membrane bounded cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0120039 plasma membrane bounded cell projection morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0120114 Sm-like protein family complex IEP Predict GO terms from Neighborhoods
MF GO:0140098 catalytic activity, acting on RNA IEP Predict GO terms from Neighborhoods
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predict GO terms from Neighborhoods
CC GO:0140513 nuclear protein-containing complex IEP Predict GO terms from Neighborhoods
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP Predict GO terms from Neighborhoods
BP GO:1900259 regulation of RNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:1900260 negative regulation of RNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901564 organonitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902692 regulation of neuroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:1903312 negative regulation of mRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
CC GO:1903561 extracellular vesicle IEP Predict GO terms from Neighborhoods
CC GO:1904949 ATPase complex IEP Predict GO terms from Neighborhoods
BP GO:1905168 positive regulation of double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
MF GO:1990446 U1 snRNP binding IEP Predict GO terms from Neighborhoods
MF GO:1990447 U2 snRNP binding IEP Predict GO terms from Neighborhoods
BP GO:1990823 response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
BP GO:1990830 cellular response to leukemia inhibitory factor IEP Predict GO terms from Neighborhoods
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
BP GO:2000145 regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000146 negative regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000177 regulation of neural precursor cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000178 negative regulation of neural precursor cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000779 regulation of double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:2000781 positive regulation of double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:2001141 regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR017861 KAE1/TsaD 9 305
IPR000905 Gcp-like_dom 30 306
IPR043129 ATPase_NBD 8 305
No external refs found!