SOLTUB.AGRIA.G00000006953

Description : FAD-binding Berberine family protein

Gene families : OG_02_0000131 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006953
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_156

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000006952	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006954	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006952	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006954	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006952	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000006954	No alias	FAD-binding Berberine family protein	0.03	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0001666	response to hypoxia	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009505	plant-type cell wall	IEA	AHRD
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEA	AHRD
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009753	response to jasmonic acid	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	None	Extended
BP	GO:0010726	positive regulation of hydrogen peroxide metabolic process	None	Extended
BP	GO:0010728	regulation of hydrogen peroxide biosynthetic process	None	Extended
BP	GO:0010729	positive regulation of hydrogen peroxide biosynthetic process	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	None	Extended
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0033993	response to lipid	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0036294	cellular response to decreased oxygen levels	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEA	AHRD
CC	GO:0048046	apoplast	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
MF	GO:0050268	coniferyl-alcohol dehydrogenase activity	IEA	AHRD
MF	GO:0050660	flavin adenine dinucleotide binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0070542	response to fatty acid	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071453	cellular response to oxygen levels	None	Extended
BP	GO:0071456	cellular response to hypoxia	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0071949	FAD binding	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901696	cannabinoid biosynthetic process	IEA	AHRD
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903426	regulation of reactive oxygen species biosynthetic process	None	Extended
BP	GO:1903428	positive regulation of reactive oxygen species biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2000379	positive regulation of reactive oxygen species metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	Predict GO terms from Neighborhoods
MF	GO:0004866	endopeptidase inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010466	negative regulation of peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030414	peptidase inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031098	stress-activated protein kinase signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0051403	stress-activated MAPK cascade	IEP	Predict GO terms from Neighborhoods
MF	GO:0061134	peptidase regulator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0061135	endopeptidase regulator activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006094	Oxid_FAD_bind_N	38	174
IPR012951	BBE	435	492
IPR036318	FAD-bd_PCMH-like_sf	18	209

External Links

No external refs found!

SOLTUB.AGRIA.G00000006953

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation