SOLTUB.AGRIA.G00000007662

Description : Pectate lyase

Gene families : OG_02_0003301 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007662
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_67

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	None	Extended
CC	GO:0031226	intrinsic component of plasma membrane	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IEA	AHRD
CC	GO:0046658	anchored component of plasma membrane	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098542	defense response to other organism	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0000076	DNA replication checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0000151	ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000775	chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
CC	GO:0000776	kinetochore	IEP	Predict GO terms from Neighborhoods
CC	GO:0000808	origin recognition complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0003688	DNA replication origin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005828	kinetochore microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005874	microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005876	spindle microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006855	xenobiotic transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006954	inflammatory response	IEP	Predict GO terms from Neighborhoods
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007094	mitotic spindle assembly checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0007565	female pregnancy	IEP	Predict GO terms from Neighborhoods
MF	GO:0008281	sulfonylurea receptor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008559	ABC-type xenobiotic transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008608	attachment of spindle microtubules to kinetochore	IEP	Predict GO terms from Neighborhoods
CC	GO:0009925	basal plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0010290	chlorophyll catabolite transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0010564	regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010948	negative regulation of cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0015127	bilirubin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015431	ABC-type glutathione S-conjugate transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015694	mercury ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015721	bile acid and bile salt transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015722	canalicular bile acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015723	bilirubin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015732	prostaglandin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015914	phospholipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016999	antibiotic metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030002	cellular anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030007	cellular potassium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030320	cellular monovalent inorganic anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030644	cellular chloride ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030653	beta-lactam antibiotic metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031427	response to methotrexate	IEP	Predict GO terms from Neighborhoods
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031526	brush border membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031577	spindle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0033046	negative regulation of sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033048	negative regulation of mitotic sister chromatid segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0033260	nuclear DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0033313	meiotic cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0033314	mitotic DNA replication checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0033316	meiotic spindle assembly checkpoint signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0033597	mitotic checkpoint complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033762	response to glucagon	IEP	Predict GO terms from Neighborhoods
BP	GO:0034501	protein localization to kinetochore	IEP	Predict GO terms from Neighborhoods
BP	GO:0034502	protein localization to chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0034612	response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0038183	bile acid signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0042023	DNA endoreduplication	IEP	Predict GO terms from Neighborhoods
BP	GO:0042178	xenobiotic catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042316	penicillin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043627	response to estrogen	IEP	Predict GO terms from Neighborhoods
BP	GO:0044703	multi-organism reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044706	multi-multicellular organism process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044779	meiotic spindle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0044786	cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0044818	mitotic G2/M transition checkpoint	IEP	Predict GO terms from Neighborhoods
BP	GO:0045786	negative regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0045841	negative regulation of mitotic metaphase/anaphase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
CC	GO:0046691	intracellular canaliculus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051447	negative regulation of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051726	regulation of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0051784	negative regulation of nuclear division	IEP	Predict GO terms from Neighborhoods
BP	GO:0051983	regulation of chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051985	negative regulation of chromosome segregation	IEP	Predict GO terms from Neighborhoods
BP	GO:0055064	chloride ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055083	monovalent inorganic anion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0070327	thyroid hormone transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070555	response to interleukin-1	IEP	Predict GO terms from Neighborhoods
BP	GO:0070633	transepithelial transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070741	response to interleukin-6	IEP	Predict GO terms from Neighborhoods
BP	GO:0071173	spindle assembly checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0071174	mitotic spindle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0071219	cellular response to molecule of bacterial origin	IEP	Predict GO terms from Neighborhoods
BP	GO:0071222	cellular response to lipopolysaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0071347	cellular response to interleukin-1	IEP	Predict GO terms from Neighborhoods
BP	GO:0071354	cellular response to interleukin-6	IEP	Predict GO terms from Neighborhoods
BP	GO:0071356	cellular response to tumor necrosis factor	IEP	Predict GO terms from Neighborhoods
BP	GO:0071383	cellular response to steroid hormone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071384	cellular response to corticosteroid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071385	cellular response to glucocorticoid stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071459	protein localization to chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:0071548	response to dexamethasone	IEP	Predict GO terms from Neighborhoods
BP	GO:0071549	cellular response to dexamethasone stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0071715	icosanoid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071716	leukotriene transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072338	cellular lactam metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0097327	response to antineoplastic agent	IEP	Predict GO terms from Neighborhoods
CC	GO:0099081	supramolecular polymer	IEP	Predict GO terms from Neighborhoods
CC	GO:0099512	supramolecular fiber	IEP	Predict GO terms from Neighborhoods
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Predict GO terms from Neighborhoods
MF	GO:0106240	labd-13Z-ene-9,15,16-triol synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120188	regulation of bile acid secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0150104	transport across blood-brain barrier	IEP	Predict GO terms from Neighborhoods
BP	GO:1901086	benzylpenicillin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901527	abscisic acid-activated signaling pathway involved in stomatal movement	IEP	Predict GO terms from Neighborhoods
BP	GO:1901655	cellular response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901993	regulation of meiotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1901994	negative regulation of meiotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902102	regulation of metaphase/anaphase transition of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902103	negative regulation of metaphase/anaphase transition of meiotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:1903083	protein localization to condensed chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1904486	response to 17alpha-ethynylestradiol	IEP	Predict GO terms from Neighborhoods
BP	GO:1905132	regulation of meiotic chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905133	negative regulation of meiotic chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:1905819	negative regulation of chromosome separation	IEP	Predict GO terms from Neighborhoods
CC	GO:1990298	bub1-bub3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990961	xenobiotic detoxification by transmembrane export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1990962	xenobiotic transport across blood-brain barrier	IEP	Predict GO terms from Neighborhoods
BP	GO:2000816	negative regulation of mitotic sister chromatid separation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011050	Pectin_lyase_fold/virulence	320	658
IPR002022	Pec_lyase	40	216
IPR002022	Pec_lyase	399	584
IPR011050	Pectin_lyase_fold/virulence	1	286

External Links

No external refs found!

SOLTUB.AGRIA.G00000007662

Expression Profile

Co-expression Networks

Functional Annotation