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  5. SOLTUB.AGRIA.G00000007754

SOLTUB.AGRIA.G00000007754


Description : Fact complex subunit spt16


Gene families : OG_02_0013042 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007754
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_247


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA AHRD
CC GO:0005694 chromosome IEA AHRD
BP GO:0009987 cellular process IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0000209 protein polyubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0000278 mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0000307 cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0000719 photoreactive repair IEP Predict GO terms from Neighborhoods
CC GO:0000775 chromosome, centromeric region IEP Predict GO terms from Neighborhoods
CC GO:0000779 condensed chromosome, centromeric region IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000791 euchromatin IEP Predict GO terms from Neighborhoods
CC GO:0000792 heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0000820 regulation of glutamine family amino acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0000993 RNA polymerase II complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001221 transcription coregulator binding IEP Predict GO terms from Neighborhoods
MF GO:0001223 transcription coactivator binding IEP Predict GO terms from Neighborhoods
MF GO:0003904 deoxyribodipyrimidine photo-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0003913 DNA photolyase activity IEP Predict GO terms from Neighborhoods
MF GO:0004842 ubiquitin-protein transferase activity IEP Predict GO terms from Neighborhoods
CC GO:0005652 nuclear lamina IEP Predict GO terms from Neighborhoods
CC GO:0005701 polytene chromosome chromocenter IEP Predict GO terms from Neighborhoods
CC GO:0005703 polytene chromosome puff IEP Predict GO terms from Neighborhoods
CC GO:0005705 polytene chromosome interband IEP Predict GO terms from Neighborhoods
CC GO:0005721 pericentric heterochromatin IEP Predict GO terms from Neighborhoods
BP GO:0006290 pyrimidine dimer repair IEP Predict GO terms from Neighborhoods
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006521 regulation of cellular amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007097 nuclear migration IEP Predict GO terms from Neighborhoods
BP GO:0007127 meiosis I IEP Predict GO terms from Neighborhoods
CC GO:0008023 transcription elongation factor complex IEP Predict GO terms from Neighborhoods
CC GO:0008024 cyclin/CDK positive transcription elongation factor complex IEP Predict GO terms from Neighborhoods
BP GO:0009314 response to radiation IEP Predict GO terms from Neighborhoods
BP GO:0009416 response to light stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009615 response to virus IEP Predict GO terms from Neighborhoods
BP GO:0009628 response to abiotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009637 response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0009638 phototropism IEP Predict GO terms from Neighborhoods
BP GO:0009648 photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0009649 entrainment of circadian clock IEP Predict GO terms from Neighborhoods
BP GO:0009785 blue light signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0009881 photoreceptor activity IEP Predict GO terms from Neighborhoods
MF GO:0009882 blue light photoreceptor activity IEP Predict GO terms from Neighborhoods
BP GO:0009902 chloroplast relocation IEP Predict GO terms from Neighborhoods
BP GO:0009903 chloroplast avoidance movement IEP Predict GO terms from Neighborhoods
BP GO:0010112 regulation of systemic acquired resistance IEP Predict GO terms from Neighborhoods
BP GO:0010117 photoprotection IEP Predict GO terms from Neighborhoods
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEP Predict GO terms from Neighborhoods
BP GO:0010310 regulation of hydrogen peroxide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
BP GO:0010498 proteasomal protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010617 circadian regulation of calcium ion oscillation IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
CC GO:0016605 PML body IEP Predict GO terms from Neighborhoods
MF GO:0017069 snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0018023 peptidyl-lysine trimethylation IEP Predict GO terms from Neighborhoods
BP GO:0018298 obsolete protein-chromophore linkage IEP Predict GO terms from Neighborhoods
BP GO:0019083 viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0019085 early viral transcription IEP Predict GO terms from Neighborhoods
BP GO:0019086 late viral transcription IEP Predict GO terms from Neighborhoods
MF GO:0019209 kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0019750 chloroplast localization IEP Predict GO terms from Neighborhoods
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predict GO terms from Neighborhoods
CC GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0019941 modification-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030048 actin filament-based movement IEP Predict GO terms from Neighborhoods
BP GO:0030163 protein catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0030295 protein kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0030435 sporulation resulting in formation of a cellular spore IEP Predict GO terms from Neighborhoods
MF GO:0030544 Hsp70 protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031022 nuclear migration along microfilament IEP Predict GO terms from Neighborhoods
BP GO:0031323 regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031325 positive regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0031401 positive regulation of protein modification process IEP Predict GO terms from Neighborhoods
BP GO:0031445 regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031453 positive regulation of heterochromatin formation IEP Predict GO terms from Neighborhoods
CC GO:0031466 Cul5-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
MF GO:0031624 ubiquitin conjugating enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0032411 positive regulation of transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032414 positive regulation of ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032784 regulation of DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP Predict GO terms from Neighborhoods
CC GO:0032806 carboxy-terminal domain protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:0033238 regulation of cellular amine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033239 negative regulation of cellular amine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033697 obsolete positive regulation of extent of heterochromatin assembly IEP Predict GO terms from Neighborhoods
BP GO:0034502 protein localization to chromosome IEP Predict GO terms from Neighborhoods
BP GO:0034770 histone H4-K20 methylation IEP Predict GO terms from Neighborhoods
BP GO:0034773 histone H4-K20 trimethylation IEP Predict GO terms from Neighborhoods
MF GO:0035064 methylated histone binding IEP Predict GO terms from Neighborhoods
CC GO:0035861 site of double-strand break IEP Predict GO terms from Neighborhoods
BP GO:0036003 positive regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0036473 cell death in response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0042726 flavin-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043153 entrainment of circadian clock by photoperiod IEP Predict GO terms from Neighborhoods
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
MF GO:0043539 protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
BP GO:0043578 nuclear matrix organization IEP Predict GO terms from Neighborhoods
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044093 positive regulation of molecular function IEP Predict GO terms from Neighborhoods
MF GO:0044390 ubiquitin-like protein conjugating enzyme binding IEP Predict GO terms from Neighborhoods
BP GO:0045737 positive regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045763 negative regulation of cellular amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0048571 long-day photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0048574 long-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
BP GO:0051147 regulation of muscle cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051480 regulation of cytosolic calcium ion concentration IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051644 plastid localization IEP Predict GO terms from Neighborhoods
BP GO:0051647 nucleus localization IEP Predict GO terms from Neighborhoods
BP GO:0051667 establishment of plastid localization IEP Predict GO terms from Neighborhoods
MF GO:0051787 misfolded protein binding IEP Predict GO terms from Neighborhoods
BP GO:0061408 positive regulation of transcription from RNA polymerase II promoter in response to heat stress IEP Predict GO terms from Neighborhoods
MF GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity IEP Predict GO terms from Neighborhoods
MF GO:0061630 ubiquitin protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0061635 regulation of protein complex stability IEP Predict GO terms from Neighborhoods
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0062014 negative regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0070534 protein K63-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0070868 obsolete heterochromatin organization involved in chromatin silencing IEP Predict GO terms from Neighborhoods
BP GO:0070936 protein K48-linked ubiquitination IEP Predict GO terms from Neighborhoods
BP GO:0071000 response to magnetism IEP Predict GO terms from Neighborhoods
BP GO:0071168 protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:0071425 hematopoietic stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0071483 cellular response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0071629 cytoplasm protein quality control by the ubiquitin-proteasome system IEP Predict GO terms from Neighborhoods
BP GO:0071902 positive regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Predict GO terms from Neighborhoods
BP GO:0072089 stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0072387 flavin adenine dinucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090308 regulation of DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0090309 positive regulation of DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0090378 seed trichome elongation IEP Predict GO terms from Neighborhoods
CC GO:0090734 site of DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0097298 regulation of nucleus size IEP Predict GO terms from Neighborhoods
MF GO:0097322 7SK snRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Predict GO terms from Neighborhoods
MF GO:0099122 RNA polymerase II C-terminal domain binding IEP Predict GO terms from Neighborhoods
BP GO:0099515 actin filament-based transport IEP Predict GO terms from Neighborhoods
BP GO:0120261 regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0120263 positive regulation of heterochromatin organization IEP Predict GO terms from Neighborhoods
MF GO:0140034 methylation-dependent protein binding IEP Predict GO terms from Neighborhoods
BP GO:0140455 cytoplasm protein quality control IEP Predict GO terms from Neighborhoods
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900618 regulation of shoot system morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1901332 negative regulation of lateral root development IEP Predict GO terms from Neighborhoods
BP GO:1901371 regulation of leaf morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:1901529 positive regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:1901672 positive regulation of systemic acquired resistance IEP Predict GO terms from Neighborhoods
BP GO:1902005 regulation of proline biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902006 negative regulation of proline biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902275 regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1902347 response to strigolactone IEP Predict GO terms from Neighborhoods
BP GO:1902446 regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1902448 positive regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1903793 positive regulation of anion transport IEP Predict GO terms from Neighborhoods
BP GO:1903961 positive regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1904031 positive regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1905269 positive regulation of chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:1905632 protein localization to euchromatin IEP Predict GO terms from Neighborhoods
BP GO:1905634 regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
BP GO:1905644 regulation of FACT complex assembly IEP Predict GO terms from Neighborhoods
BP GO:1905646 positive regulation of FACT complex assembly IEP Predict GO terms from Neighborhoods
BP GO:2000214 regulation of proline metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000215 negative regulation of proline metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000282 regulation of cellular amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000283 negative regulation of cellular amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000379 positive regulation of reactive oxygen species metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR029148 FACT-Spt16_Nlobe 417 535
IPR029148 FACT-Spt16_Nlobe 3 117
No external refs found!