SOLTUB.AGRIA.G00000007777


Description : H/ACA ribonucleoprotein complex subunit cbf5


Gene families : OG_02_0013044 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007777
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_65


Type GO Term Name Evidence Source
BP GO:0000454 snoRNA guided rRNA pseudouridine synthesis IEA AHRD
BP GO:0000455 enzyme-directed rRNA pseudouridine synthesis IEA AHRD
BP GO:0000495 box H/ACA RNA 3'-end processing IEA AHRD
CC GO:0000775 chromosome, centromeric region IEA AHRD
CC GO:0001650 fibrillar center IEA AHRD
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003720 telomerase activity IEA AHRD
MF GO:0004730 pseudouridylate synthase activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005874 microtubule IEA AHRD
BP GO:0006897 endocytosis IEA AHRD
BP GO:0006974 cellular response to DNA damage stimulus IEA AHRD
BP GO:0006979 response to oxidative stress IEA AHRD
BP GO:0007049 cell cycle IEA AHRD
BP GO:0007281 germ cell development IEA AHRD
BP GO:0008284 positive regulation of cell population proliferation IEA AHRD
MF GO:0009982 pseudouridine synthase activity IEA AHRD
CC GO:0015030 Cajal body IEA AHRD
MF GO:0019843 rRNA binding IEA AHRD
BP GO:0030010 establishment of cell polarity IEA AHRD
BP GO:0031120 snRNA pseudouridine synthesis IEA AHRD
CC GO:0031429 box H/ACA snoRNP complex IEA AHRD
BP GO:0032212 positive regulation of telomere maintenance via telomerase IEA AHRD
MF GO:0034513 box H/ACA snoRNA binding IEA AHRD
BP GO:0035220 wing disc development IEA AHRD
BP GO:0046689 response to mercury ion IEA AHRD
BP GO:0048315 conidium formation IEA AHRD
BP GO:0051211 anisotropic cell growth IEA AHRD
BP GO:0051301 cell division IEA AHRD
BP GO:0051973 positive regulation of telomerase activity IEA AHRD
MF GO:0070034 telomerase RNA binding IEA AHRD
CC GO:0090661 box H/ACA telomerase RNP complex IEA AHRD
BP GO:0090666 scaRNA localization to Cajal body IEA AHRD
BP GO:0090669 telomerase RNA stabilization IEA AHRD
BP GO:1904851 positive regulation of establishment of protein localization to telomere IEA AHRD
BP GO:1904874 positive regulation of telomerase RNA localization to Cajal body IEA AHRD
BP GO:1990481 mRNA pseudouridine synthesis IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
CC GO:0000151 ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predict GO terms from Neighborhoods
BP GO:0000460 maturation of 5.8S rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000469 cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000724 double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0000725 recombinational repair IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0001091 RNA polymerase II general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0001094 TFIID-class transcription factor complex binding IEP Predict GO terms from Neighborhoods
MF GO:0001098 basal transcription machinery binding IEP Predict GO terms from Neighborhoods
MF GO:0001099 basal RNA polymerase II transcription machinery binding IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0001560 regulation of cell growth by extracellular stimulus IEP Predict GO terms from Neighborhoods
CC GO:0001651 dense fibrillar component IEP Predict GO terms from Neighborhoods
BP GO:0001825 blastocyst formation IEP Predict GO terms from Neighborhoods
BP GO:0002164 larval development IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
MF GO:0005527 macrolide binding IEP Predict GO terms from Neighborhoods
MF GO:0005528 FK506 binding IEP Predict GO terms from Neighborhoods
CC GO:0005654 nucleoplasm IEP Predict GO terms from Neighborhoods
CC GO:0005730 nucleolus IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0005811 lipid droplet IEP Predict GO terms from Neighborhoods
CC GO:0005832 chaperonin-containing T-complex IEP Predict GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006278 RNA-templated DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006302 double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:0006310 DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0006325 chromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0006334 nucleosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0006337 nucleosome disassembly IEP Predict GO terms from Neighborhoods
BP GO:0006338 chromatin remodeling IEP Predict GO terms from Neighborhoods
BP GO:0007004 telomere maintenance via telomerase IEP Predict GO terms from Neighborhoods
BP GO:0007339 binding of sperm to zona pellucida IEP Predict GO terms from Neighborhoods
BP GO:0008037 cell recognition IEP Predict GO terms from Neighborhoods
BP GO:0008156 negative regulation of DNA replication IEP Predict GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008169 C-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008650 rRNA (uridine-2'-O-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0009383 rRNA (cytosine-C5-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009988 cell-cell recognition IEP Predict GO terms from Neighborhoods
BP GO:0010027 thylakoid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0010197 polar nucleus fusion IEP Predict GO terms from Neighborhoods
BP GO:0010507 negative regulation of autophagy IEP Predict GO terms from Neighborhoods
BP GO:0010833 telomere maintenance via telomere lengthening IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016241 regulation of macroautophagy IEP Predict GO terms from Neighborhoods
BP GO:0016242 negative regulation of macroautophagy IEP Predict GO terms from Neighborhoods
MF GO:0016427 tRNA (cytosine) methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016428 tRNA (cytosine-5-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016434 rRNA (cytosine) methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016444 somatic cell DNA recombination IEP Predict GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predict GO terms from Neighborhoods
MF GO:0016859 cis-trans isomerase activity IEP Predict GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
CC GO:0030684 preribosome IEP Predict GO terms from Neighborhoods
CC GO:0030687 preribosome, large subunit precursor IEP Predict GO terms from Neighborhoods
BP GO:0030855 epithelial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0031428 box C/D RNP complex IEP Predict GO terms from Neighborhoods
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
MF GO:0031681 G-protein beta-subunit binding IEP Predict GO terms from Neighborhoods
CC GO:0032040 small-subunit processome IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
BP GO:0032268 regulation of cellular protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032984 protein-containing complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0032986 protein-DNA complex disassembly IEP Predict GO terms from Neighborhoods
BP GO:0033313 meiotic cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
CC GO:0034388 Pwp2p-containing subcomplex of 90S preribosome IEP Predict GO terms from Neighborhoods
CC GO:0034399 nuclear periphery IEP Predict GO terms from Neighborhoods
MF GO:0034511 U3 snoRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0034728 nucleosome organization IEP Predict GO terms from Neighborhoods
BP GO:0035036 sperm-egg recognition IEP Predict GO terms from Neighborhoods
BP GO:0035262 gonad morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0035626 juvenile hormone mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0040013 negative regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0040018 positive regulation of multicellular organism growth IEP Predict GO terms from Neighborhoods
BP GO:0040020 regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0042273 ribosomal large subunit biogenesis IEP Predict GO terms from Neighborhoods
MF GO:0042393 histone binding IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
MF GO:0044183 protein folding chaperone IEP Predict GO terms from Neighborhoods
BP GO:0044260 cellular macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0045446 endothelial cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045835 negative regulation of meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP Predict GO terms from Neighborhoods
BP GO:0046662 regulation of oviposition IEP Predict GO terms from Neighborhoods
MF GO:0048027 mRNA 5'-UTR binding IEP Predict GO terms from Neighborhoods
BP GO:0048254 snoRNA localization IEP Predict GO terms from Neighborhoods
MF GO:0048487 beta-tubulin binding IEP Predict GO terms from Neighborhoods
BP GO:0048520 positive regulation of behavior IEP Predict GO terms from Neighborhoods
BP GO:0048521 negative regulation of behavior IEP Predict GO terms from Neighborhoods
BP GO:0048544 recognition of pollen IEP Predict GO terms from Neighborhoods
BP GO:0050795 regulation of behavior IEP Predict GO terms from Neighborhoods
BP GO:0051447 negative regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051598 meiotic recombination checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0051784 negative regulation of nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0060321 acceptance of pollen IEP Predict GO terms from Neighborhoods
MF GO:0062105 RNA 2'-O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0065004 protein-DNA complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0070475 rRNA base methylation IEP Predict GO terms from Neighborhoods
MF GO:0070594 juvenile hormone response element binding IEP Predict GO terms from Neighborhoods
CC GO:0070761 pre-snoRNP complex IEP Predict GO terms from Neighborhoods
BP GO:0071824 protein-DNA complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
BP GO:0080154 regulation of fertilization IEP Predict GO terms from Neighborhoods
BP GO:0090069 regulation of ribosome biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090325 regulation of locomotion involved in locomotory behavior IEP Predict GO terms from Neighborhoods
BP GO:0090327 negative regulation of locomotion involved in locomotory behavior IEP Predict GO terms from Neighborhoods
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Predict GO terms from Neighborhoods
CC GO:0101031 chaperone complex IEP Predict GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predict GO terms from Neighborhoods
MF GO:0140296 general transcription initiation factor binding IEP Predict GO terms from Neighborhoods
CC GO:0140535 intracellular protein-containing complex IEP Predict GO terms from Neighborhoods
BP GO:1900034 regulation of cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:1900035 negative regulation of cellular response to heat IEP Predict GO terms from Neighborhoods
BP GO:1901046 positive regulation of oviposition IEP Predict GO terms from Neighborhoods
BP GO:1901998 toxin transport IEP Predict GO terms from Neighborhoods
BP GO:1905516 positive regulation of fertilization IEP Predict GO terms from Neighborhoods
MF GO:1990226 histone methyltransferase binding IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 110 226
IPR032819 TruB_C 227 293
IPR012960 Dyskerin-like 49 106
IPR002478 PUA 297 369
IPR015947 PUA-like_sf 296 377
IPR004802 tRNA_PsdUridine_synth_B_fam 56 381
IPR004521 Uncharacterised_CHP00451 292 368
IPR020103 PsdUridine_synth_cat_dom_sf 49 294
No external refs found!