SOLTUB.AGRIA.G00000008125

Description : Tubby-like F-box protein

Gene families : OG_02_0008114 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000008125
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_63

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009536	plastid	IEA	AHRD
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001541	ovarian follicle development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001752	compound eye photoreceptor fate commitment	IEP	Predict GO terms from Neighborhoods
MF	GO:0004105	choline-phosphate cytidylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004306	ethanolamine-phosphate cytidylyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005355	glucose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005457	GDP-fucose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005459	UDP-galactose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005460	UDP-glucose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005464	UDP-xylose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005635	nuclear envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006646	phosphatidylethanolamine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006657	CDP-choline pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006820	anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007276	gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007283	spermatogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007465	R7 cell fate commitment	IEP	Predict GO terms from Neighborhoods
MF	GO:0008270	zinc ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008645	hexose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009134	nucleoside diphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009191	ribonucleoside diphosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009833	plant-type primary cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009900	dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0009901	anther dehiscence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010191	mucilage metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010192	mucilage biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010208	pollen wall assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0010243	response to organonitrogen compound	IEP	Predict GO terms from Neighborhoods
BP	GO:0010584	pollen exine formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015145	monosaccharide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015149	hexose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015234	thiamine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015651	quaternary ammonium group transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015695	organic cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015697	quaternary ammonium group transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015749	monosaccharide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015783	GDP-fucose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015786	UDP-glucose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015790	UDP-xylose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015888	thiamine transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016032	viral process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017110	nucleoside diphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0018995	host cellular component	IEP	Predict GO terms from Neighborhoods
BP	GO:0019048	modulation by virus of host process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019049	mitigation of host antiviral defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0019054	modulation by virus of host cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019637	organophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022414	reproductive process	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030682	mitigation of host defenses by symbiont	IEP	Predict GO terms from Neighborhoods
BP	GO:0030974	thiamine pyrophosphate transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0031074	nucleocytoplasmic transport complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031210	phosphatidylcholine binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031301	integral component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031305	integral component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031306	intrinsic component of mitochondrial outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031307	integral component of mitochondrial outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0032592	integral component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032885	regulation of polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033643	host cell part	IEP	Predict GO terms from Neighborhoods
CC	GO:0033644	host cell membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0033646	host intracellular part	IEP	Predict GO terms from Neighborhoods
CC	GO:0033647	host intracellular organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0033655	host cell cytoplasm part	IEP	Predict GO terms from Neighborhoods
BP	GO:0034219	carbohydrate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035461	vitamin transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035821	modulation of process of another organism	IEP	Predict GO terms from Neighborhoods
MF	GO:0036080	purine nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0039504	suppression by virus of host adaptive immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0039588	suppression by virus of host antigen processing and presentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0039648	modulation by virus of host protein ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0042564	NLS-dependent protein nuclear import complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0042587	glycogen granule	IEP	Predict GO terms from Neighborhoods
BP	GO:0042706	eye photoreceptor cell fate commitment	IEP	Predict GO terms from Neighborhoods
MF	GO:0042803	protein homodimerization activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043065	positive regulation of apoptotic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0043167	ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043169	cation binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043434	response to peptide hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:0044003	modulation by symbiont of host process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044068	modulation by symbiont of host cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044088	regulation of vacuole organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0044174	host cell endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0044177	host cell Golgi apparatus	IEP	Predict GO terms from Neighborhoods
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045117	azole transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0045165	cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0046337	phosphatidylethanolamine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046552	photoreceptor cell fate commitment	IEP	Predict GO terms from Neighborhoods
BP	GO:0046776	suppression by virus of host antigen processing and presentation of peptide antigen via MHC class I	IEP	Predict GO terms from Neighborhoods
MF	GO:0046914	transition metal ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046983	protein dimerization activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048232	male gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048609	multicellular organismal reproductive process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048663	neuron fate commitment	IEP	Predict GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051119	sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051180	vitamin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051701	biological process involved in interaction with host	IEP	Predict GO terms from Neighborhoods
BP	GO:0052173	response to defenses of other organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0052200	response to host defenses	IEP	Predict GO terms from Neighborhoods
BP	GO:0052553	modulation by symbiont of host immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0052562	suppression by symbiont of host immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0052572	response to host immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0070567	cytidylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071934	thiamine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072334	UDP-galactose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072348	sulfur compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0072531	pyrimidine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0075136	response to host	IEP	Predict GO terms from Neighborhoods
BP	GO:0075528	modulation by virus of host immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0080148	negative regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
MF	GO:0090422	thiamine pyrophosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090480	purine nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1900030	regulation of pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901264	carbohydrate derivative transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:1901474	azole transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902115	regulation of organelle assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902584	positive regulation of response to water deprivation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904116	response to vasopressin	IEP	Predict GO terms from Neighborhoods
BP	GO:1904659	glucose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000785	regulation of autophagosome assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:2001233	regulation of apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR025659	Tubby-like_C	99	404
IPR036047	F-box-like_dom_sf	44	94
IPR000007	Tubby_C	113	399
IPR001810	F-box_dom	50	100

External Links

No external refs found!

SOLTUB.AGRIA.G00000008125

Expression Profile

Co-expression Networks

Functional Annotation