SOLTUB.AGRIA.G00000008413

Description : Tetratricopeptide repeat protein 13

Gene families : OG_02_0013180 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000008413
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_172

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005856	cytoskeleton	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042742	defense response to bacterium	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048731	system development	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	IEA	AHRD
MF	GO:0060090	molecular adaptor activity	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000414	regulation of histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0000416	positive regulation of histone H3-K36 methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0000976	transcription cis-regulatory region binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0001892	embryonic placenta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0003012	muscle system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0003299	muscle hypertrophy in response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0003300	cardiac muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
MF	GO:0003677	DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003690	double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005737	cytoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006259	DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006807	nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008170	N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008276	protein methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009554	megasporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009556	microsporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009893	positive regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009909	regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010044	response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	Predict GO terms from Neighborhoods
BP	GO:0010321	regulation of vegetative phase change	IEP	Predict GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010964	regulation of small non-coding RNA-mediated heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014887	cardiac muscle adaptation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014888	striated muscle adaptation	IEP	Predict GO terms from Neighborhoods
BP	GO:0014896	muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0014897	striated muscle hypertrophy	IEP	Predict GO terms from Neighborhoods
BP	GO:0014898	cardiac muscle hypertrophy in response to stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016567	protein ubiquitination	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016929	deSUMOylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019213	deacetylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019538	protein metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030014	CCR4-NOT complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031056	regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031058	positive regulation of histone modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0031060	regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031062	positive regulation of histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031399	regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031401	positive regulation of protein modification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031445	regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031624	ubiquitin conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032776	DNA methylation on cytosine	IEP	Predict GO terms from Neighborhoods
BP	GO:0033198	response to ATP	IEP	Predict GO terms from Neighborhoods
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035306	positive regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035307	positive regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036211	protein modification process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042054	histone methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042393	histone binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0042826	histone deacetylase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043500	muscle adaptation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044238	primary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044390	ubiquitin-like protein conjugating enzyme binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048522	positive regulation of cellular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048831	regulation of shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050848	regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0050850	positive regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0050885	neuromuscular process controlling balance	IEP	Predict GO terms from Neighborhoods
BP	GO:0050905	neuromuscular process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051725	protein de-ADP-ribosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060411	cardiac septum morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060413	atrial septum morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
BP	GO:0070884	regulation of calcineurin-NFAT signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070886	positive regulation of calcineurin-NFAT signaling cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0071275	cellular response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071318	cellular response to ATP	IEP	Predict GO terms from Neighborhoods
BP	GO:0071704	organic substance metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0098599	palmitoyl hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098732	macromolecule deacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0098734	macromolecule depalmitoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0106056	regulation of calcineurin-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0106058	positive regulation of calcineurin-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0106167	extracellular ATP signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0120261	regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predict GO terms from Neighborhoods
MF	GO:0140110	transcription regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140291	peptidyl-glutamate ADP-deribosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0140293	ADP-ribosylglutamate hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140537	transcription regulator activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140677	molecular function activator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900367	positive regulation of defense response to insect	IEP	Predict GO terms from Neighborhoods
BP	GO:1902275	regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001253	regulation of histone H3-K36 trimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2001255	positive regulation of histone H3-K36 trimethylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR019734	TPR_repeat	468	497
IPR011990	TPR-like_helical_dom_sf	38	557

External Links

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SOLTUB.AGRIA.G00000008413

Expression Profile

Co-expression Networks

Functional Annotation