| CC | GO:0000785 | chromatin | None | Extended |
| CC | GO:0000792 | heterochromatin | IEA | AHRD |
| CC | GO:0000803 | sex chromosome | None | Extended |
| CC | GO:0001650 | fibrillar center | IEA | AHRD |
| CC | GO:0001741 | XY body | IEA | AHRD |
| MF | GO:0002020 | protease binding | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0005488 | binding | None | Extended |
| MF | GO:0005515 | protein binding | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005694 | chromosome | None | Extended |
| CC | GO:0005829 | cytosol | IEA | AHRD |
| CC | GO:0005886 | plasma membrane | IEA | AHRD |
| BP | GO:0006355 | regulation of DNA-templated transcription | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0006937 | regulation of muscle contraction | None | Extended |
| BP | GO:0006942 | regulation of striated muscle contraction | None | Extended |
| BP | GO:0006950 | response to stress | None | Extended |
| BP | GO:0006996 | organelle organization | None | Extended |
| BP | GO:0006997 | nucleus organization | None | Extended |
| BP | GO:0007275 | multicellular organism development | None | Extended |
| BP | GO:0008016 | regulation of heart contraction | None | Extended |
| BP | GO:0008104 | protein localization | None | Extended |
| MF | GO:0008134 | transcription factor binding | IEA | AHRD |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009266 | response to temperature stimulus | None | Extended |
| BP | GO:0009408 | response to heat | None | Extended |
| BP | GO:0009628 | response to abiotic stimulus | None | Extended |
| BP | GO:0009790 | embryo development | None | Extended |
| BP | GO:0009792 | embryo development ending in birth or egg hatching | None | Extended |
| BP | GO:0009889 | regulation of biosynthetic process | None | Extended |
| BP | GO:0009890 | negative regulation of biosynthetic process | None | Extended |
| BP | GO:0009892 | negative regulation of metabolic process | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010286 | heat acclimation | IEA | AHRD |
| BP | GO:0010468 | regulation of gene expression | None | Extended |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | None | Extended |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0010621 | negative regulation of transcription by transcription factor localization | IEA | AHRD |
| BP | GO:0010959 | regulation of metal ion transport | None | Extended |
| CC | GO:0016020 | membrane | None | Extended |
| BP | GO:0016043 | cellular component organization | None | Extended |
| CC | GO:0016604 | nuclear body | None | Extended |
| CC | GO:0016605 | PML body | IEA | AHRD |
| BP | GO:0016925 | protein sumoylation | IEA | AHRD |
| BP | GO:0018193 | peptidyl-amino acid modification | None | Extended |
| BP | GO:0018205 | peptidyl-lysine modification | None | Extended |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0019222 | regulation of metabolic process | None | Extended |
| BP | GO:0019538 | protein metabolic process | None | Extended |
| MF | GO:0019899 | enzyme binding | None | Extended |
| BP | GO:0022898 | regulation of transmembrane transporter activity | None | Extended |
| CC | GO:0030054 | cell junction | None | Extended |
| BP | GO:0030097 | hemopoiesis | None | Extended |
| CC | GO:0030425 | dendrite | IEA | AHRD |
| BP | GO:0030575 | nuclear body organization | None | Extended |
| BP | GO:0030578 | PML body organization | IEA | AHRD |
| BP | GO:0031323 | regulation of cellular metabolic process | None | Extended |
| BP | GO:0031324 | negative regulation of cellular metabolic process | None | Extended |
| BP | GO:0031326 | regulation of cellular biosynthetic process | None | Extended |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | None | Extended |
| MF | GO:0031386 | protein tag | IEA | AHRD |
| BP | GO:0031647 | regulation of protein stability | IEA | AHRD |
| BP | GO:0032409 | regulation of transporter activity | None | Extended |
| BP | GO:0032411 | positive regulation of transporter activity | None | Extended |
| BP | GO:0032412 | regulation of ion transmembrane transporter activity | None | Extended |
| BP | GO:0032414 | positive regulation of ion transmembrane transporter activity | None | Extended |
| BP | GO:0032446 | protein modification by small protein conjugation | None | Extended |
| BP | GO:0032501 | multicellular organismal process | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0032781 | positive regulation of ATP-dependent activity | None | Extended |
| BP | GO:0032879 | regulation of localization | None | Extended |
| BP | GO:0032970 | regulation of actin filament-based process | None | Extended |
| BP | GO:0033036 | macromolecule localization | None | Extended |
| BP | GO:0033365 | protein localization to organelle | None | Extended |
| BP | GO:0034504 | protein localization to nucleus | None | Extended |
| BP | GO:0034762 | regulation of transmembrane transport | None | Extended |
| BP | GO:0034764 | positive regulation of transmembrane transport | None | Extended |
| BP | GO:0034765 | regulation of ion transmembrane transport | None | Extended |
| BP | GO:0034767 | positive regulation of ion transmembrane transport | None | Extended |
| BP | GO:0036211 | protein modification process | None | Extended |
| MF | GO:0042802 | identical protein binding | IEA | AHRD |
| CC | GO:0042995 | cell projection | None | Extended |
| CC | GO:0043005 | neuron projection | None | Extended |
| BP | GO:0043009 | chordate embryonic development | IEA | AHRD |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043228 | non-membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | None | Extended |
| BP | GO:0043269 | regulation of ion transport | None | Extended |
| BP | GO:0043270 | positive regulation of ion transport | None | Extended |
| BP | GO:0043412 | macromolecule modification | None | Extended |
| BP | GO:0043433 | negative regulation of DNA-binding transcription factor activity | IEA | AHRD |
| BP | GO:0043462 | regulation of ATP-dependent activity | None | Extended |
| BP | GO:0044057 | regulation of system process | None | Extended |
| BP | GO:0044092 | negative regulation of molecular function | None | Extended |
| BP | GO:0044093 | positive regulation of molecular function | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEA | AHRD |
| CC | GO:0045202 | synapse | IEA | AHRD |
| BP | GO:0045892 | negative regulation of DNA-templated transcription | None | Extended |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0048513 | animal organ development | None | Extended |
| BP | GO:0048518 | positive regulation of biological process | None | Extended |
| BP | GO:0048519 | negative regulation of biological process | None | Extended |
| BP | GO:0048522 | positive regulation of cellular process | None | Extended |
| BP | GO:0048523 | negative regulation of cellular process | None | Extended |
| BP | GO:0048534 | hematopoietic or lymphoid organ development | None | Extended |
| BP | GO:0048856 | anatomical structure development | None | Extended |
| BP | GO:0050789 | regulation of biological process | None | Extended |
| BP | GO:0050794 | regulation of cellular process | None | Extended |
| BP | GO:0050896 | response to stimulus | None | Extended |
| BP | GO:0051049 | regulation of transport | None | Extended |
| BP | GO:0051050 | positive regulation of transport | None | Extended |
| BP | GO:0051090 | regulation of DNA-binding transcription factor activity | None | Extended |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | None | Extended |
| BP | GO:0051179 | localization | None | Extended |
| BP | GO:0051239 | regulation of multicellular organismal process | None | Extended |
| BP | GO:0051252 | regulation of RNA metabolic process | None | Extended |
| BP | GO:0051253 | negative regulation of RNA metabolic process | None | Extended |
| BP | GO:0051641 | cellular localization | None | Extended |
| BP | GO:0051716 | cellular response to stimulus | IEA | AHRD |
| BP | GO:0051924 | regulation of calcium ion transport | None | Extended |
| BP | GO:0051928 | positive regulation of calcium ion transport | None | Extended |
| BP | GO:0055117 | regulation of cardiac muscle contraction | None | Extended |
| BP | GO:0060021 | roof of mouth development | IEA | AHRD |
| BP | GO:0060216 | definitive hemopoiesis | IEA | AHRD |
| BP | GO:0060255 | regulation of macromolecule metabolic process | None | Extended |
| BP | GO:0065007 | biological regulation | None | Extended |
| BP | GO:0065008 | regulation of biological quality | None | Extended |
| BP | GO:0065009 | regulation of molecular function | None | Extended |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | None | Extended |
| BP | GO:0070727 | cellular macromolecule localization | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0071840 | cellular component organization or biogenesis | None | Extended |
| BP | GO:0080090 | regulation of primary metabolic process | None | Extended |
| BP | GO:0086004 | regulation of cardiac muscle cell contraction | IEA | AHRD |
| BP | GO:0090204 | protein localization to nuclear pore | IEA | AHRD |
| BP | GO:0090257 | regulation of muscle system process | None | Extended |
| BP | GO:0090435 | protein localization to nuclear envelope | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| CC | GO:0120025 | plasma membrane bounded cell projection | None | Extended |
| BP | GO:1901019 | regulation of calcium ion transmembrane transporter activity | None | Extended |
| BP | GO:1901021 | positive regulation of calcium ion transmembrane transporter activity | None | Extended |
| BP | GO:1901564 | organonitrogen compound metabolic process | None | Extended |
| BP | GO:1901894 | regulation of ATPase-coupled calcium transmembrane transporter activity | None | Extended |
| BP | GO:1901896 | positive regulation of ATPase-coupled calcium transmembrane transporter activity | IEA | AHRD |
| BP | GO:1902679 | negative regulation of RNA biosynthetic process | None | Extended |
| BP | GO:1903115 | regulation of actin filament-based movement | None | Extended |
| BP | GO:1903169 | regulation of calcium ion transmembrane transport | None | Extended |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | None | Extended |
| BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | None | Extended |
| BP | GO:1903522 | regulation of blood circulation | None | Extended |
| BP | GO:1904062 | regulation of cation transmembrane transport | None | Extended |
| BP | GO:1904064 | positive regulation of cation transmembrane transport | None | Extended |
| BP | GO:1904427 | positive regulation of calcium ion transmembrane transport | None | Extended |
| MF | GO:1990381 | ubiquitin-specific protease binding | IEA | AHRD |
| BP | GO:2001141 | regulation of RNA biosynthetic process | None | Extended |