SOLTUB.AGRIA.G00000008642

Description : Ribosomal RNA-processing protein 7 A

Gene families : OG_02_0013230 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000008642
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_171

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEA	AHRD
BP	GO:0001825	blastocyst formation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	AHRD
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	AHRD
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032545	CURI complex	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0034456	UTP-C complex	IEA	AHRD
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048646	anatomical structure formation involved in morphogenesis	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002213	defense response to insect	IEP	Predict GO terms from Neighborhoods
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005657	replication fork	IEP	Predict GO terms from Neighborhoods
BP	GO:0006260	DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0006270	DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006271	DNA strand elongation involved in DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0007568	aging	IEP	Predict GO terms from Neighborhoods
CC	GO:0008622	epsilon DNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0008623	CHRAC	IEP	Predict GO terms from Neighborhoods
BP	GO:0009556	microsporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009786	regulation of asymmetric cell division	IEP	Predict GO terms from Neighborhoods
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022402	cell cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022616	DNA strand elongation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030337	DNA polymerase processivity factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030527	structural constituent of chromatin	IEP	Predict GO terms from Neighborhoods
CC	GO:0031010	ISWI-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031507	heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034293	sexual sporulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
CC	GO:0042575	DNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0042766	obsolete nucleosome mobilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0043596	nuclear replication fork	IEP	Predict GO terms from Neighborhoods
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Predict GO terms from Neighborhoods
BP	GO:0048236	plant-type sporogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0065004	protein-DNA complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0070828	heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071163	DNA replication preinitiation complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0140529	CMG complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:1902292	cell cycle DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902296	DNA strand elongation involved in cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:1902315	nuclear cell cycle DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902319	DNA strand elongation involved in nuclear cell cycle DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:1902975	mitotic DNA replication initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902983	DNA strand elongation involved in mitotic DNA replication	IEP	Predict GO terms from Neighborhoods
CC	GO:1904949	ATPase complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024326	RRP7_C	201	323

External Links

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SOLTUB.AGRIA.G00000008642

Expression Profile

Co-expression Networks

Functional Annotation