SOLTUB.AGRIA.G00000008928

Description : Polyribonucleotide nucleotidyltransferase, putative

Gene families : OG_02_0043061 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000008928
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_129

Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEA	AHRD
BP	GO:0000957	mitochondrial RNA catabolic process	None	Extended
BP	GO:0000958	mitochondrial mRNA catabolic process	IEA	AHRD
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	None	Extended
BP	GO:0000965	mitochondrial RNA 3'-end processing	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004532	exoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	IEA	AHRD
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004674	protein serine/threonine kinase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010467	gene expression	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0034470	ncRNA processing	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
BP	GO:0005996	monosaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006004	fucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006486	protein glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006487	protein N-linked glycosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008417	fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016052	carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016477	cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018392	glycoprotein 3-alpha-L-fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019317	fucose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019318	hexose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019320	hexose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019827	stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0021795	cerebral cortex cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0021799	cerebral cortex radially oriented cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0021885	forebrain cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0022029	telencephalon cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0022407	regulation of cell-cell adhesion	IEP	Predict GO terms from Neighborhoods
BP	GO:0030155	regulation of cell adhesion	IEP	Predict GO terms from Neighborhoods
CC	GO:0032580	Golgi cisterna membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0036065	fucosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042354	L-fucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042355	L-fucose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043413	macromolecule glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0044282	small molecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046365	monosaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046920	alpha-(1->3)-fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048870	cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0097150	neuronal stem cell population maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0098727	maintenance of cell number	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR020568	Ribosomal_S5_D2-typ_fold	57	198
IPR012340	NA-bd_OB-fold	914	980
IPR020568	Ribosomal_S5_D2-typ_fold	357	555
IPR002902	GNK2	1082	1136
IPR002902	GNK2	1168	1244
IPR001247	ExoRNase_PH_dom1	68	198
IPR001247	ExoRNase_PH_dom1	379	512
IPR001245	Ser-Thr/Tyr_kinase_cat_dom	1329	1593
IPR036456	PNPase_PH_RNA-bd_sf	280	382
IPR012162	PNPase	66	754
IPR015847	ExoRNase_PH_dom2	201	263
IPR011009	Kinase-like_dom_sf	1306	1594
IPR036345	ExoRNase_PH_dom2_sf	506	608
IPR012340	NA-bd_OB-fold	671	757
IPR036345	ExoRNase_PH_dom2_sf	192	285
IPR015848	PNPase_PH_RNA-bd_bac/org-type	297	375
IPR003029	S1_domain	682	753
IPR036612	KH_dom_type_1_sf	604	678

External Links

No external refs found!

SOLTUB.AGRIA.G00000008928

Expression Profile

Co-expression Networks

Functional Annotation