SOLTUB.AGRIA.G00000009163


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_02_0013392 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009163
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_355


Type GO Term Name Evidence Source
BP GO:0000122 negative regulation of transcription by RNA polymerase II IEA AHRD
CC GO:0000781 chromosome, telomeric region IEA AHRD
CC GO:0000785 chromatin IEA AHRD
MF GO:0001069 regulatory region RNA binding IEA AHRD
BP GO:0001893 maternal placenta development IEA AHRD
MF GO:0003730 mRNA 3'-UTR binding IEA AHRD
CC GO:0005844 polysome IEA AHRD
CC GO:0005849 mRNA cleavage factor complex IEA AHRD
BP GO:0006406 mRNA export from nucleus IEA AHRD
BP GO:0007283 spermatogenesis IEA AHRD
BP GO:0007319 negative regulation of oskar mRNA translation IEA AHRD
MF GO:0008266 poly(U) RNA binding IEA AHRD
BP GO:0008283 cell population proliferation IEA AHRD
BP GO:0008584 male gonad development IEA AHRD
BP GO:0010228 vegetative to reproductive phase transition of meristem IEA AHRD
CC GO:0015030 Cajal body IEA AHRD
BP GO:0016233 telomere capping IEA AHRD
CC GO:0016363 nuclear matrix IEA AHRD
BP GO:0030324 lung development IEA AHRD
MF GO:0030371 translation repressor activity IEA AHRD
BP GO:0031053 primary miRNA processing IEA AHRD
MF GO:0034046 poly(G) binding IEA AHRD
MF GO:0035198 miRNA binding IEA AHRD
MF GO:0035613 RNA stem-loop binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
CC GO:0043186 P granule IEA AHRD
CC GO:0043204 perikaryon IEA AHRD
BP GO:0044806 G-quadruplex DNA unwinding IEA AHRD
BP GO:0045727 positive regulation of translation IEA AHRD
BP GO:0048025 negative regulation of mRNA splicing, via spliceosome IEA AHRD
BP GO:0048026 positive regulation of mRNA splicing, via spliceosome IEA AHRD
MF GO:0048027 mRNA 5'-UTR binding IEA AHRD
BP GO:0048709 oligodendrocyte differentiation IEA AHRD
BP GO:0048864 stem cell development IEA AHRD
BP GO:0051385 response to mineralocorticoid IEA AHRD
CC GO:0070062 extracellular exosome IEA AHRD
MF GO:0070182 DNA polymerase binding IEA AHRD
CC GO:0071013 catalytic step 2 spliceosome IEA AHRD
CC GO:0071598 neuronal ribonucleoprotein granule IEA AHRD
BP GO:0072423 response to DNA damage checkpoint signaling IEA AHRD
MF GO:0097157 pre-mRNA intronic binding IEA AHRD
MF GO:0098505 G-rich strand telomeric DNA binding IEA AHRD
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEA AHRD
CC GO:0098978 glutamatergic synapse IEA AHRD
CC GO:0099524 postsynaptic cytosol IEA AHRD
BP GO:1901000 regulation of response to salt stress IEA AHRD
BP GO:1903688 positive regulation of border follicle cell migration IEA AHRD
BP GO:1904358 positive regulation of telomere maintenance via telomere lengthening IEA AHRD
BP GO:1905663 positive regulation of telomerase RNA reverse transcriptase activity IEA AHRD
MF GO:1990247 N6-methyladenosine-containing RNA binding IEA AHRD
MF GO:1990715 mRNA CDS binding IEA AHRD
BP GO:2000070 regulation of response to water deprivation IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predict GO terms from Neighborhoods
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predict GO terms from Neighborhoods
BP GO:0000398 mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
CC GO:0005637 nuclear inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0005694 chromosome IEP Predict GO terms from Neighborhoods
CC GO:0005815 microtubule organizing center IEP Predict GO terms from Neighborhoods
CC GO:0005816 spindle pole body IEP Predict GO terms from Neighborhoods
CC GO:0005819 spindle IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006997 nucleus organization IEP Predict GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0007017 microtubule-based process IEP Predict GO terms from Neighborhoods
BP GO:0007018 microtubule-based movement IEP Predict GO terms from Neighborhoods
BP GO:0007097 nuclear migration IEP Predict GO terms from Neighborhoods
BP GO:0007399 nervous system development IEP Predict GO terms from Neighborhoods
BP GO:0008360 regulation of cell shape IEP Predict GO terms from Neighborhoods
BP GO:0008380 RNA splicing IEP Predict GO terms from Neighborhoods
CC GO:0009524 phragmoplast IEP Predict GO terms from Neighborhoods
BP GO:0009692 ethylene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009693 ethylene biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009738 abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010150 leaf senescence IEP Predict GO terms from Neighborhoods
BP GO:0010970 transport along microtubule IEP Predict GO terms from Neighborhoods
CC GO:0019866 organelle inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0022604 regulation of cell morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0030473 nuclear migration along microtubule IEP Predict GO terms from Neighborhoods
MF GO:0030674 protein-macromolecule adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0030705 cytoskeleton-dependent intracellular transport IEP Predict GO terms from Neighborhoods
CC GO:0031965 nuclear membrane IEP Predict GO terms from Neighborhoods
CC GO:0031981 nuclear lumen IEP Predict GO terms from Neighborhoods
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0033365 protein localization to organelle IEP Predict GO terms from Neighborhoods
BP GO:0034504 protein localization to nucleus IEP Predict GO terms from Neighborhoods
CC GO:0034993 meiotic nuclear membrane microtubule tethering complex IEP Predict GO terms from Neighborhoods
MF GO:0035925 mRNA 3'-UTR AU-rich region binding IEP Predict GO terms from Neighborhoods
BP GO:0043449 cellular alkene metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043450 alkene biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0043495 protein-membrane adaptor activity IEP Predict GO terms from Neighborhoods
MF GO:0043621 protein self-association IEP Predict GO terms from Neighborhoods
CC GO:0044732 mitotic spindle pole body IEP Predict GO terms from Neighborhoods
BP GO:0050000 chromosome localization IEP Predict GO terms from Neighborhoods
BP GO:0051259 protein complex oligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051260 protein homooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051291 protein heterooligomerization IEP Predict GO terms from Neighborhoods
BP GO:0051640 organelle localization IEP Predict GO terms from Neighborhoods
BP GO:0051647 nucleus localization IEP Predict GO terms from Neighborhoods
BP GO:0051656 establishment of organelle localization IEP Predict GO terms from Neighborhoods
MF GO:0060090 molecular adaptor activity IEP Predict GO terms from Neighborhoods
BP GO:0061842 microtubule organizing center localization IEP Predict GO terms from Neighborhoods
BP GO:0070197 meiotic attachment of telomere to nuclear envelope IEP Predict GO terms from Neighborhoods
BP GO:0072384 organelle transport along microtubule IEP Predict GO terms from Neighborhoods
BP GO:0090435 protein localization to nuclear envelope IEP Predict GO terms from Neighborhoods
BP GO:0090693 plant organ senescence IEP Predict GO terms from Neighborhoods
BP GO:0097240 chromosome attachment to the nuclear envelope IEP Predict GO terms from Neighborhoods
CC GO:0098796 membrane protein complex IEP Predict GO terms from Neighborhoods
BP GO:0099111 microtubule-based transport IEP Predict GO terms from Neighborhoods
CC GO:0106083 nuclear membrane protein complex IEP Predict GO terms from Neighborhoods
CC GO:0106094 nuclear membrane microtubule tethering complex IEP Predict GO terms from Neighborhoods
BP GO:0120251 hydrocarbon biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0120252 hydrocarbon metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0120254 olefinic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0120255 olefinic compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0140666 annealing activity IEP Predict GO terms from Neighborhoods
BP GO:1900673 olefin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900674 olefin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:2000769 regulation of establishment or maintenance of cell polarity regulating cell shape IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 75
IPR000504 RRM_dom 111 169
IPR035979 RBD_domain_sf 3 106
IPR035979 RBD_domain_sf 108 215
No external refs found!