1. Home
  2. Species
  3. Solanum tuberosum Agria
  4. Sequence
  5. SOLTUB.AGRIA.G00000009561
Predict GO terms from Neighborhoods

SOLTUB.AGRIA.G00000009561


Description : E3 ubiquitin-protein ligase


Gene families : OG_02_0001369 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009561
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_230


Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA AHRD
BP GO:0009411 response to UV IEA AHRD
BP GO:0032502 developmental process IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
MF GO:0061630 ubiquitin protein ligase activity IEA AHRD
BP GO:0065007 biological regulation IEA AHRD
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predict GO terms from Neighborhoods
MF GO:0000217 DNA secondary structure binding IEP Predict GO terms from Neighborhoods
CC GO:0000421 autophagosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0000919 cell plate assembly IEP Predict GO terms from Neighborhoods
BP GO:0001505 regulation of neurotransmitter levels IEP Predict GO terms from Neighborhoods
CC GO:0001726 ruffle IEP Predict GO terms from Neighborhoods
BP GO:0001731 formation of translation preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0001732 formation of cytoplasmic translation initiation complex IEP Predict GO terms from Neighborhoods
MF GO:0003680 minor groove of adenine-thymine-rich DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003743 translation initiation factor activity IEP Predict GO terms from Neighborhoods
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0005096 GTPase activator activity IEP Predict GO terms from Neighborhoods
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding IEP Predict GO terms from Neighborhoods
CC GO:0005811 lipid droplet IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0006446 regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0006482 protein demethylation IEP Predict GO terms from Neighborhoods
BP GO:0006851 mitochondrial calcium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0006897 endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006898 receptor-mediated endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0007032 endosome organization IEP Predict GO terms from Neighborhoods
BP GO:0008214 protein dealkylation IEP Predict GO terms from Neighborhoods
MF GO:0008289 lipid binding IEP Predict GO terms from Neighborhoods
BP GO:0008535 respiratory chain complex IV assembly IEP Predict GO terms from Neighborhoods
BP GO:0009312 oligosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009504 cell plate IEP Predict GO terms from Neighborhoods
BP GO:0009819 drought recovery IEP Predict GO terms from Neighborhoods
BP GO:0009890 negative regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009892 negative regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009920 cell plate formation involved in plant-type cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0009939 positive regulation of gibberellic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0010009 cytoplasmic side of endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0010267 ta-siRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0010325 raffinose family oligosaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0010331 gibberellin binding IEP Predict GO terms from Neighborhoods
BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010529 negative regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010629 negative regulation of gene expression IEP Predict GO terms from Neighborhoods
BP GO:0014910 regulation of smooth muscle cell migration IEP Predict GO terms from Neighborhoods
BP GO:0014911 positive regulation of smooth muscle cell migration IEP Predict GO terms from Neighborhoods
CC GO:0015629 actin cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0016043 cellular component organization IEP Predict GO terms from Neighborhoods
BP GO:0016192 vesicle-mediated transport IEP Predict GO terms from Neighborhoods
BP GO:0016577 histone demethylation IEP Predict GO terms from Neighborhoods
BP GO:0017004 cytochrome complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0017157 regulation of exocytosis IEP Predict GO terms from Neighborhoods
MF GO:0019003 GDP binding IEP Predict GO terms from Neighborhoods
BP GO:0019079 viral genome replication IEP Predict GO terms from Neighborhoods
MF GO:0019840 isoprenoid binding IEP Predict GO terms from Neighborhoods
BP GO:0022411 cellular component disassembly IEP Predict GO terms from Neighborhoods
BP GO:0022607 cellular component assembly IEP Predict GO terms from Neighborhoods
CC GO:0030136 clathrin-coated vesicle IEP Predict GO terms from Neighborhoods
BP GO:0030422 siRNA processing IEP Predict GO terms from Neighborhoods
CC GO:0030662 coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030665 clathrin-coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030666 endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030667 secretory granule membrane IEP Predict GO terms from Neighborhoods
CC GO:0030669 clathrin-coated endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031057 negative regulation of histone modification IEP Predict GO terms from Neighborhoods
BP GO:0031062 positive regulation of histone methylation IEP Predict GO terms from Neighborhoods
CC GO:0031090 organelle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031224 intrinsic component of membrane IEP Predict GO terms from Neighborhoods
BP GO:0031324 negative regulation of cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0031369 translation initiation factor binding IEP Predict GO terms from Neighborhoods
MF GO:0031490 chromatin DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031623 receptor internalization IEP Predict GO terms from Neighborhoods
CC GO:0031902 late endosome membrane IEP Predict GO terms from Neighborhoods
BP GO:0031930 mitochondria-nucleus signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0032009 early phagosome IEP Predict GO terms from Neighborhoods
MF GO:0032182 ubiquitin-like protein binding IEP Predict GO terms from Neighborhoods
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0032456 endocytic recycling IEP Predict GO terms from Neighborhoods
CC GO:0032585 multivesicular body membrane IEP Predict GO terms from Neighborhoods
CC GO:0032586 protein storage vacuole membrane IEP Predict GO terms from Neighborhoods
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0033290 eukaryotic 48S preinitiation complex IEP Predict GO terms from Neighborhoods
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP Predict GO terms from Neighborhoods
BP GO:0034389 lipid droplet organization IEP Predict GO terms from Neighborhoods
BP GO:0034614 cellular response to reactive oxygen species IEP Predict GO terms from Neighborhoods
BP GO:0034720 histone H3-K4 demethylation IEP Predict GO terms from Neighborhoods
BP GO:0035065 regulation of histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0035067 negative regulation of histone acetylation IEP Predict GO terms from Neighborhoods
BP GO:0036465 synaptic vesicle recycling IEP Predict GO terms from Neighborhoods
BP GO:0039694 viral RNA genome replication IEP Predict GO terms from Neighborhoods
BP GO:0042255 ribosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0042256 mature ribosome assembly IEP Predict GO terms from Neighborhoods
MF GO:0042562 hormone binding IEP Predict GO terms from Neighborhoods
CC GO:0042589 zymogen granule membrane IEP Predict GO terms from Neighborhoods
BP GO:0043087 regulation of GTPase activity IEP Predict GO terms from Neighborhoods
MF GO:0043130 ubiquitin binding IEP Predict GO terms from Neighborhoods
CC GO:0043195 terminal bouton IEP Predict GO terms from Neighborhoods
CC GO:0043228 non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predict GO terms from Neighborhoods
MF GO:0043325 phosphatidylinositol-3,4-bisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0043547 positive regulation of GTPase activity IEP Predict GO terms from Neighborhoods
CC GO:0043614 multi-eIF complex IEP Predict GO terms from Neighborhoods
MF GO:0043621 protein self-association IEP Predict GO terms from Neighborhoods
BP GO:0044087 regulation of cellular component biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0044088 regulation of vacuole organization IEP Predict GO terms from Neighborhoods
BP GO:0045022 early endosome to late endosome transport IEP Predict GO terms from Neighborhoods
BP GO:0045056 transcytosis IEP Predict GO terms from Neighborhoods
CC GO:0045121 membrane raft IEP Predict GO terms from Neighborhoods
BP GO:0045324 late endosome to vacuole transport IEP Predict GO terms from Neighborhoods
BP GO:0045824 negative regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045921 positive regulation of exocytosis IEP Predict GO terms from Neighborhoods
BP GO:0045947 negative regulation of translational initiation IEP Predict GO terms from Neighborhoods
BP GO:0046928 regulation of neurotransmitter secretion IEP Predict GO terms from Neighborhoods
BP GO:0048167 regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048168 regulation of neuronal synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048169 regulation of long-term neuronal synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048227 plasma membrane to endosome transport IEP Predict GO terms from Neighborhoods
BP GO:0048440 carpel development IEP Predict GO terms from Neighborhoods
BP GO:0048444 floral organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048518 positive regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0048522 positive regulation of cellular process IEP Predict GO terms from Neighborhoods
BP GO:0048530 fruit morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048660 regulation of smooth muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048661 positive regulation of smooth muscle cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048759 xylem vessel member cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0050789 regulation of biological process IEP Predict GO terms from Neighborhoods
BP GO:0050794 regulation of cellular process IEP Predict GO terms from Neighborhoods
MF GO:0051021 GDP-dissociation inhibitor binding IEP Predict GO terms from Neighborhoods
BP GO:0051036 regulation of endosome size IEP Predict GO terms from Neighborhoods
BP GO:0051047 positive regulation of secretion IEP Predict GO terms from Neighborhoods
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051248 negative regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051489 regulation of filopodium assembly IEP Predict GO terms from Neighborhoods
BP GO:0051570 regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP Predict GO terms from Neighborhoods
BP GO:0051588 regulation of neurotransmitter transport IEP Predict GO terms from Neighborhoods
CC GO:0055037 recycling endosome IEP Predict GO terms from Neighborhoods
BP GO:0060491 regulation of cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0060966 regulation of gene silencing by RNA IEP Predict GO terms from Neighborhoods
BP GO:0070076 histone lysine demethylation IEP Predict GO terms from Neighborhoods
BP GO:0070301 cellular response to hydrogen peroxide IEP Predict GO terms from Neighborhoods
BP GO:0070509 calcium ion import IEP Predict GO terms from Neighborhoods
BP GO:0070588 calcium ion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0070988 demethylation IEP Predict GO terms from Neighborhoods
CC GO:0070993 translation preinitiation complex IEP Predict GO terms from Neighborhoods
MF GO:0071074 eukaryotic initiation factor eIF2 binding IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072583 clathrin-dependent endocytosis IEP Predict GO terms from Neighborhoods
BP GO:0080154 regulation of fertilization IEP Predict GO terms from Neighborhoods
BP GO:0090601 enucleation IEP Predict GO terms from Neighborhoods
BP GO:0090602 sieve element enucleation IEP Predict GO terms from Neighborhoods
BP GO:0090630 activation of GTPase activity IEP Predict GO terms from Neighborhoods
BP GO:0097242 amyloid-beta clearance IEP Predict GO terms from Neighborhoods
CC GO:0097443 sorting endosome IEP Predict GO terms from Neighborhoods
BP GO:0097494 regulation of vesicle size IEP Predict GO terms from Neighborhoods
CC GO:0098559 cytoplasmic side of early endosome membrane IEP Predict GO terms from Neighborhoods
CC GO:0098563 intrinsic component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0098842 postsynaptic early endosome IEP Predict GO terms from Neighborhoods
CC GO:0098845 postsynaptic endosome IEP Predict GO terms from Neighborhoods
CC GO:0098857 membrane microdomain IEP Predict GO terms from Neighborhoods
BP GO:0098927 vesicle-mediated transport between endosomal compartments IEP Predict GO terms from Neighborhoods
CC GO:0098993 anchored component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0120032 regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0150093 amyloid-beta clearance by transcytosis IEP Predict GO terms from Neighborhoods
BP GO:1900101 regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response IEP Predict GO terms from Neighborhoods
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP Predict GO terms from Neighborhoods
BP GO:1900407 regulation of cellular response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1900409 positive regulation of cellular response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1901348 positive regulation of secondary cell wall biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1901983 regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1901984 negative regulation of protein acetylation IEP Predict GO terms from Neighborhoods
BP GO:1902115 regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902882 regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:1902884 positive regulation of response to oxidative stress IEP Predict GO terms from Neighborhoods
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1903008 organelle disassembly IEP Predict GO terms from Neighborhoods
BP GO:1903305 regulation of regulated secretory pathway IEP Predict GO terms from Neighborhoods
BP GO:1903340 positive regulation of cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1903525 regulation of membrane tubulation IEP Predict GO terms from Neighborhoods
BP GO:1903527 positive regulation of membrane tubulation IEP Predict GO terms from Neighborhoods
BP GO:1903532 positive regulation of secretion by cell IEP Predict GO terms from Neighborhoods
BP GO:1903729 regulation of plasma membrane organization IEP Predict GO terms from Neighborhoods
BP GO:1905177 tracheary element differentiation IEP Predict GO terms from Neighborhoods
BP GO:1905516 positive regulation of fertilization IEP Predict GO terms from Neighborhoods
BP GO:1905691 lipid droplet disassembly IEP Predict GO terms from Neighborhoods
BP GO:1905897 regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1905898 positive regulation of response to endoplasmic reticulum stress IEP Predict GO terms from Neighborhoods
BP GO:1990542 mitochondrial transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:2000286 receptor internalization involved in canonical Wnt signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2000300 regulation of synaptic vesicle exocytosis IEP Predict GO terms from Neighborhoods
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP Predict GO terms from Neighborhoods
BP GO:2000785 regulation of autophagosome assembly IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 197 348
No external refs found!