SOLTUB.AGRIA.G00000010115

Description : Pectate lyase

Gene families : OG_02_0005676 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010115
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_100

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEA	AHRD
BP	GO:0009664	plant-type cell wall organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	None	Extended
CC	GO:0031226	intrinsic component of plasma membrane	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0042547	cell wall modification involved in multidimensional cell growth	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IEA	AHRD
CC	GO:0046658	anchored component of plasma membrane	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0098542	defense response to other organism	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000121	glycerol-1-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0000794	condensed nuclear chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000910	cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000911	cytokinesis by cell plate formation	IEP	Predict GO terms from Neighborhoods
CC	GO:0000922	spindle pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0001539	cilium or flagellum-dependent cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0001578	microtubule bundle formation	IEP	Predict GO terms from Neighborhoods
MF	GO:0001653	peptide receptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001756	somitogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0002263	cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002285	lymphocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002312	B cell activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002313	mature B cell differentiation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0002315	marginal zone B cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002335	mature B cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002366	leukocyte activation involved in immune response	IEP	Predict GO terms from Neighborhoods
BP	GO:0003002	regionalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0003341	cilium movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0003774	cytoskeletal motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003777	microtubule motor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0004563	beta-N-acetylhexosaminidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005677	chromatin silencing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005700	polytene chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005794	Golgi apparatus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005871	kinesin complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005874	microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0006004	fucose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006022	aminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006114	glycerol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006664	glycolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006665	sphingolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006687	glycosphingolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006771	riboflavin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007017	microtubule-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007018	microtubule-based movement	IEP	Predict GO terms from Neighborhoods
BP	GO:0007292	female gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007338	single fertilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007389	pattern specification process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008017	microtubule binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008092	cytoskeletal protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008422	beta-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008574	plus-end-directed microtubule motor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008593	regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009231	riboflavin biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009574	preprophase band	IEP	Predict GO terms from Neighborhoods
BP	GO:0009934	regulation of meristem structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009952	anterior/posterior pattern specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010048	vernalization response	IEP	Predict GO terms from Neighborhoods
BP	GO:0010196	nonphotochemical quenching	IEP	Predict GO terms from Neighborhoods
BP	GO:0010375	stomatal complex patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0010440	stomatal lineage progression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010555	response to mannitol	IEP	Predict GO terms from Neighborhoods
MF	GO:0015631	tubulin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0015929	hexosaminidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016758	hexosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0017046	peptide hormone binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0017053	transcription repressor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0019203	carbohydrate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019401	alditol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022008	neurogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0022607	cellular component assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0030098	lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030173	integral component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0030183	B cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030217	T cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
BP	GO:0030317	flagellated sperm motility	IEP	Predict GO terms from Neighborhoods
CC	GO:0030849	autosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0030865	cortical cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031109	microtubule polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031519	PcG protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031523	Myb complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032502	developmental process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033829	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0035064	methylated histone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035282	segmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042110	T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042113	B cell activation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042562	hormone binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042996	regulation of Golgi to plasma membrane protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042998	positive regulation of Golgi to plasma membrane protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0043136	glycerol-3-phosphatase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0043226	organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043227	membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043229	intracellular organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043622	cortical microtubule organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0043726	5-amino-6-(5-phosphoribitylamino)uracil phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044111	formation of structure involved in a symbiotic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0045169	fusome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045478	fusome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0045746	negative regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046602	regulation of mitotic centrosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046785	microtubule polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048477	oogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
MF	GO:0050308	sugar-phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050905	neuromuscular process	IEP	Predict GO terms from Neighborhoods
CC	GO:0051233	spindle midzone	IEP	Predict GO terms from Neighborhoods
BP	GO:0051255	spindle midzone assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051256	mitotic spindle midzone assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051258	protein polymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051569	regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051571	positive regulation of histone H3-K4 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0052093	formation of specialized structure for nutrient acquisition	IEP	Predict GO terms from Neighborhoods
BP	GO:0052096	formation of syncytium involving giant cell for nutrient acquisition	IEP	Predict GO terms from Neighborhoods
BP	GO:0060285	cilium-dependent cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0060294	cilium movement involved in cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:0060866	leaf abscission	IEP	Predict GO terms from Neighborhoods
BP	GO:0061085	regulation of histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0061087	positive regulation of histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070176	DRM complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0090548	response to nitrate starvation	IEP	Predict GO terms from Neighborhoods
CC	GO:0090571	RNA polymerase II transcription repressor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0090619	meiotic spindle pole	IEP	Predict GO terms from Neighborhoods
CC	GO:0097431	mitotic spindle pole	IEP	Predict GO terms from Neighborhoods
BP	GO:0097435	supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0097722	sperm motility	IEP	Predict GO terms from Neighborhoods
CC	GO:0099081	supramolecular polymer	IEP	Predict GO terms from Neighborhoods
CC	GO:0099512	supramolecular fiber	IEP	Predict GO terms from Neighborhoods
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Predict GO terms from Neighborhoods
MF	GO:0102148	N-acetyl-beta-D-galactosaminidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140034	methylation-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902366	regulation of Notch signaling pathway involved in somitogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1902367	negative regulation of Notch signaling pathway involved in somitogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1903076	regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903078	positive regulation of protein localization to plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1903131	mononuclear cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1903509	liposaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904377	positive regulation of protein localization to cell periphery	IEP	Predict GO terms from Neighborhoods
BP	GO:1905477	positive regulation of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:1990023	mitotic spindle midzone	IEP	Predict GO terms from Neighborhoods
BP	GO:1990066	energy quenching	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	173	356
IPR011050	Pectin_lyase_fold/virulence	89	433

External Links

No external refs found!

SOLTUB.AGRIA.G00000010115

Expression Profile

Co-expression Networks

Functional Annotation