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  5. SOLTUB.AGRIA.G00000000993

SOLTUB.AGRIA.G00000000993


Description : Copia-like polyprotein/retrotransposon


Gene families : OG_02_0002347 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000000993
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_250

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000001026 No alias Retrovirus-related pol polyprotein from transposon tnt 1-94 0.11 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001026 No alias Retrovirus-related pol polyprotein from transposon tnt 1-94 0.11 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001026 No alias Retrovirus-related pol polyprotein from transposon tnt 1-94 0.11 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0005982 starch metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006073 cellular glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009250 glucan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019252 starch biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0030246 carbohydrate binding IEP Predict GO terms from Neighborhoods
MF GO:0030247 polysaccharide binding IEP Predict GO terms from Neighborhoods
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0044042 glucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000014 regulation of endosperm development IEP Predict GO terms from Neighborhoods
MF GO:2001066 amylopectin binding IEP Predict GO terms from Neighborhoods
MF GO:2001070 starch binding IEP Predict GO terms from Neighborhoods

No InterPro domains available for this sequence

No external refs found!