SOLTUB.AGRIA.G00000010164


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_02_0000238 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010164
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_67


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005622 intracellular anatomical structure IEP Predict GO terms from Neighborhoods
BP GO:0005975 carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0005976 polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006805 xenobiotic metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006835 dicarboxylic acid transport IEP Predict GO terms from Neighborhoods
BP GO:0006855 xenobiotic transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0006954 inflammatory response IEP Predict GO terms from Neighborhoods
BP GO:0007565 female pregnancy IEP Predict GO terms from Neighborhoods
MF GO:0008281 sulfonylurea receptor activity IEP Predict GO terms from Neighborhoods
MF GO:0008559 ABC-type xenobiotic transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0009056 catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009057 macromolecule catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009624 response to nematode IEP Predict GO terms from Neighborhoods
CC GO:0009925 basal plasma membrane IEP Predict GO terms from Neighborhoods
MF GO:0010290 chlorophyll catabolite transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0010393 galacturonan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010422 regulation of brassinosteroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010893 positive regulation of steroid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015127 bilirubin transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015431 ABC-type glutathione S-conjugate transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015694 mercury ion transport IEP Predict GO terms from Neighborhoods
BP GO:0015721 bile acid and bile salt transport IEP Predict GO terms from Neighborhoods
BP GO:0015722 canalicular bile acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015723 bilirubin transport IEP Predict GO terms from Neighborhoods
BP GO:0015732 prostaglandin transport IEP Predict GO terms from Neighborhoods
BP GO:0015914 phospholipid transport IEP Predict GO terms from Neighborhoods
BP GO:0016052 carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016835 carbon-oxygen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predict GO terms from Neighborhoods
BP GO:0016999 antibiotic metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019218 regulation of steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0030002 cellular anion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030007 cellular potassium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030320 cellular monovalent inorganic anion homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0030570 pectate lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0030644 cellular chloride ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0030653 beta-lactam antibiotic metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0031253 cell projection membrane IEP Predict GO terms from Neighborhoods
BP GO:0031427 response to methotrexate IEP Predict GO terms from Neighborhoods
CC GO:0031526 brush border membrane IEP Predict GO terms from Neighborhoods
BP GO:0031960 response to corticosteroid IEP Predict GO terms from Neighborhoods
BP GO:0032352 positive regulation of hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032355 response to estradiol IEP Predict GO terms from Neighborhoods
BP GO:0032870 cellular response to hormone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0033762 response to glucagon IEP Predict GO terms from Neighborhoods
BP GO:0034612 response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0038183 bile acid signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0042178 xenobiotic catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042316 penicillin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP Predict GO terms from Neighborhoods
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0043627 response to estrogen IEP Predict GO terms from Neighborhoods
BP GO:0044703 multi-organism reproductive process IEP Predict GO terms from Neighborhoods
BP GO:0044706 multi-multicellular organism process IEP Predict GO terms from Neighborhoods
BP GO:0045488 pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045490 pectin catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045824 negative regulation of innate immune response IEP Predict GO terms from Neighborhoods
BP GO:0045940 positive regulation of steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046618 xenobiotic export from cell IEP Predict GO terms from Neighborhoods
BP GO:0046685 response to arsenic-containing substance IEP Predict GO terms from Neighborhoods
CC GO:0046691 intracellular canaliculus IEP Predict GO terms from Neighborhoods
BP GO:0046885 regulation of hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046886 positive regulation of hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048444 floral organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048446 petal morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050810 regulation of steroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0051384 response to glucocorticoid IEP Predict GO terms from Neighborhoods
BP GO:0055064 chloride ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055083 monovalent inorganic anion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0070327 thyroid hormone transport IEP Predict GO terms from Neighborhoods
BP GO:0070555 response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0070633 transepithelial transport IEP Predict GO terms from Neighborhoods
BP GO:0070741 response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071216 cellular response to biotic stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071219 cellular response to molecule of bacterial origin IEP Predict GO terms from Neighborhoods
BP GO:0071222 cellular response to lipopolysaccharide IEP Predict GO terms from Neighborhoods
BP GO:0071347 cellular response to interleukin-1 IEP Predict GO terms from Neighborhoods
BP GO:0071354 cellular response to interleukin-6 IEP Predict GO terms from Neighborhoods
BP GO:0071356 cellular response to tumor necrosis factor IEP Predict GO terms from Neighborhoods
BP GO:0071383 cellular response to steroid hormone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071384 cellular response to corticosteroid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071385 cellular response to glucocorticoid stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071495 cellular response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071548 response to dexamethasone IEP Predict GO terms from Neighborhoods
BP GO:0071549 cellular response to dexamethasone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071715 icosanoid transport IEP Predict GO terms from Neighborhoods
BP GO:0071716 leukotriene transport IEP Predict GO terms from Neighborhoods
BP GO:0072338 cellular lactam metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090030 regulation of steroid hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0097327 response to antineoplastic agent IEP Predict GO terms from Neighborhoods
BP GO:0120188 regulation of bile acid secretion IEP Predict GO terms from Neighborhoods
BP GO:0150104 transport across blood-brain barrier IEP Predict GO terms from Neighborhoods
BP GO:1901086 benzylpenicillin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement IEP Predict GO terms from Neighborhoods
BP GO:1901655 cellular response to ketone IEP Predict GO terms from Neighborhoods
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:1902446 regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1902448 positive regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1904486 response to 17alpha-ethynylestradiol IEP Predict GO terms from Neighborhoods
BP GO:1990961 xenobiotic detoxification by transmembrane export across the plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:1990962 xenobiotic transport across blood-brain barrier IEP Predict GO terms from Neighborhoods
BP GO:2000488 positive regulation of brassinosteroid biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR043502 DNA/RNA_pol_sf 1000 1448
IPR012337 RNaseH-like_sf 621 781
IPR025724 GAG-pre-integrase_dom 542 610
IPR029472 Copia-like_N 24 68
IPR013103 RVT_2 1000 1243
IPR005162 Retrotrans_gag_dom 94 193
IPR001584 Integrase_cat-core 627 724
No external refs found!