| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000329 | fungal-type vacuole membrane | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000900 | mRNA regulatory element binding translation repressor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000976 | transcription cis-regulatory region binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000977 | RNA polymerase II transcription regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000987 | cis-regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001067 | transcription regulatory region nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0003002 | regionalization | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003677 | DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004650 | polygalacturonase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005381 | iron ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005384 | manganese ion transmembrane transporter activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005657 | replication fork | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006110 | regulation of glycolytic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006140 | regulation of nucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006283 | transcription-coupled nucleotide-excision repair | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006353 | DNA-templated transcription termination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006369 | termination of RNA polymerase II transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006401 | RNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006402 | mRNA catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006641 | triglyceride metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006828 | manganese ion transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006880 | intracellular sequestering of iron ion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007162 | negative regulation of cell adhesion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007165 | signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007389 | pattern specification process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009299 | mRNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009734 | auxin-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009755 | hormone-mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009831 | plant-type cell wall modification involved in multidimensional cell growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009838 | abscission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009851 | auxin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009856 | pollination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009875 | pollen-pistil interaction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009900 | dehiscence | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009901 | anther dehiscence | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009909 | regulation of flower development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009934 | regulation of meristem structural organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009956 | radial pattern formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009966 | regulation of signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009968 | negative regulation of signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010047 | fruit dehiscence | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010051 | xylem and phloem pattern formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010074 | maintenance of meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010077 | maintenance of inflorescence meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010087 | phloem or xylem histogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010093 | specification of floral organ identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010094 | specification of carpel identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010187 | negative regulation of seed germination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010219 | regulation of vernalization response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010220 | positive regulation of vernalization response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010449 | root meristem growth | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010468 | regulation of gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010492 | maintenance of shoot apical meristem identity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010497 | plasmodesmata-mediated intercellular transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010646 | regulation of cell communication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010648 | negative regulation of cell communication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010930 | negative regulation of auxin mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016073 | snRNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016180 | snRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019432 | triglyceride biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019725 | cellular homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019827 | stem cell population maintenance | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022407 | regulation of cell-cell adhesion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022408 | negative regulation of cell-cell adhesion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0023051 | regulation of signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0023057 | negative regulation of signaling | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030026 | cellular manganese ion homeostasis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030247 | polysaccharide binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030371 | translation repressor activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030874 | nucleolar chromatin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030970 | retrograde protein transport, ER to cytosol | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031126 | sno(s)RNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031137 | regulation of conjugation with cellular fusion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031138 | negative regulation of conjugation with cellular fusion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031554 | regulation of termination of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032527 | protein exit from endoplasmic reticulum | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0032574 | 5'-3' RNA helicase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0033045 | regulation of sister chromatid segregation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0033620 | Mei2 nuclear dot complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033677 | DNA/RNA helicase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033678 | 5'-3' DNA/RNA helicase activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034064 | Tor2-Mei2-Ste11 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0034098 | VCP-NPL4-UFD1 AAA ATPase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034389 | lipid droplet organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034755 | iron ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035266 | meristem growth | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0035473 | lipase binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0035556 | intracellular signal transduction | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0035649 | Nrd1 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0035861 | site of double-strand break | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040019 | positive regulation of embryonic development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0040020 | regulation of meiotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042445 | hormone metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042446 | hormone biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042547 | cell wall modification involved in multidimensional cell growth | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0042803 | protein homodimerization activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043139 | 5'-3' DNA helicase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043144 | sno(s)RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043243 | positive regulation of protein-containing complex disassembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043470 | regulation of carbohydrate catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043618 | regulation of transcription from RNA polymerase II promoter in response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043620 | regulation of DNA-templated transcription in response to stress | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043628 | small regulatory ncRNA 3'-end processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043631 | RNA polyadenylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044344 | cellular response to fibroblast growth factor stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045005 | DNA-templated DNA replication maintenance of fidelity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045454 | cell redox homeostasis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045723 | positive regulation of fatty acid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045836 | positive regulation of meiotic nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046460 | neutral lipid biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046463 | acylglycerol biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046982 | protein heterodimerization activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046983 | protein dimerization activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048519 | negative regulation of biological process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048523 | negative regulation of cellular process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048581 | negative regulation of post-embryonic development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048585 | negative regulation of response to stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048830 | adventitious root development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048831 | regulation of shoot system development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051238 | sequestering of metal ion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051276 | chromosome organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051446 | positive regulation of meiotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051651 | maintenance of location in cell | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051785 | positive regulation of nuclear division | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0055071 | manganese ion homeostasis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0055102 | lipase inhibitor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060256 | regulation of flocculation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060257 | negative regulation of flocculation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060566 | positive regulation of termination of DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060771 | phyllotactic patterning | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060772 | leaf phyllotactic patterning | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060774 | auxin mediated signaling pathway involved in phyllotactic patterning | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060860 | regulation of floral organ abscission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071421 | manganese ion transmembrane transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071774 | response to fibroblast growth factor | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080036 | regulation of cytokinin-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080037 | negative regulation of cytokinin-activated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090701 | specification of plant organ identity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0090734 | site of DNA damage | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097548 | seed abscission | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097577 | sequestering of iron ion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098727 | maintenance of cell number | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0110046 | signal transduction involved in cell cycle switching, mitotic to meiotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140110 | transcription regulator activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140311 | protein sequestering activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140313 | molecular sequestering activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140538 | negative regulation of conjugation with zygote | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900458 | negative regulation of brassinosteroid mediated signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900542 | regulation of purine nucleotide metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901575 | organic substance catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901957 | regulation of cutin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901959 | positive regulation of cutin biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901993 | regulation of meiotic cell cycle phase transition | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901995 | positive regulation of meiotic cell cycle phase transition | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902099 | regulation of metaphase/anaphase transition of cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902101 | positive regulation of metaphase/anaphase transition of cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902102 | regulation of metaphase/anaphase transition of meiotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902104 | positive regulation of metaphase/anaphase transition of meiotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903513 | endoplasmic reticulum to cytosol transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903578 | regulation of ATP metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905132 | regulation of meiotic chromosome separation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905134 | positive regulation of meiotic chromosome separation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905189 | regulation of metaphase/anaphase transition of meiosis II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905191 | positive regulation of metaphase/anaphase transition of meiosis II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1905820 | positive regulation of chromosome separation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1990248 | regulation of transcription from RNA polymerase II promoter in response to DNA damage | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990837 | sequence-specific double-stranded DNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2000241 | regulation of reproductive process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |