SOLTUB.AGRIA.G00000010428

Description : Histone-lysine N-methyltransferase, H3 lysine-9 specific

Gene families : OG_02_0002902 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010428
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_236

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	None	Extended
MF	GO:0000166	nucleotide binding	None	Extended
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000792	heterochromatin	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003690	double-stranded DNA binding	IEA	AHRD
MF	GO:0003700	DNA-binding transcription factor activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	IEA	AHRD
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008170	N-methyltransferase activity	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
MF	GO:0008276	protein methyltransferase activity	None	Extended
MF	GO:0008327	methyl-CpG binding	IEA	AHRD
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEA	AHRD
BP	GO:0010243	response to organonitrogen compound	None	Extended
MF	GO:0010428	methyl-CpNpG binding	IEA	AHRD
MF	GO:0010429	methyl-CpNpN binding	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016278	lysine N-methyltransferase activity	None	Extended
MF	GO:0016279	protein-lysine N-methyltransferase activity	None	Extended
BP	GO:0016458	obsolete gene silencing	IEA	AHRD
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEA	AHRD
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019953	sexual reproduction	IEA	AHRD
BP	GO:0022402	cell cycle process	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
BP	GO:0031047	gene silencing by RNA	None	Extended
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEA	AHRD
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031060	regulation of histone methylation	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032501	multicellular organismal process	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034968	histone lysine methylation	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	IEA	AHRD
MF	GO:0042054	histone methyltransferase activity	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	IEA	AHRD
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048856	anatomical structure development	IEA	AHRD
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051641	cellular localization	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0001558	regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009642	response to light intensity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009646	response to absence of light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009723	response to ethylene	IEP	Predict GO terms from Neighborhoods
BP	GO:0009739	response to gibberellin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009743	response to carbohydrate	IEP	Predict GO terms from Neighborhoods
BP	GO:0009744	response to sucrose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010116	positive regulation of abscisic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010150	leaf senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010252	auxin homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019216	regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030307	positive regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0034285	response to disaccharide	IEP	Predict GO terms from Neighborhoods
BP	GO:0043086	negative regulation of catalytic activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043455	regulation of secondary metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044092	negative regulation of molecular function	IEP	Predict GO terms from Neighborhoods
BP	GO:0045828	positive regulation of isoprenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045834	positive regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045927	positive regulation of growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0046889	positive regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0047484	regulation of response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0048527	lateral root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048528	post-embryonic root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048639	positive regulation of developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0051341	regulation of oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051354	negative regulation of oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090693	plant organ senescence	IEP	Predict GO terms from Neighborhoods
BP	GO:0090696	post-embryonic plant organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090697	post-embryonic plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090698	post-embryonic plant morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1900618	regulation of shoot system morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1901000	regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901001	negative regulation of response to salt stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1901371	regulation of leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1901419	regulation of response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902932	positive regulation of alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905392	plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:1905613	regulation of developmental vegetative growth	IEP	Predict GO terms from Neighborhoods
BP	GO:1905615	positive regulation of developmental vegetative growth	IEP	Predict GO terms from Neighborhoods
BP	GO:1905957	regulation of cellular response to alcohol	IEP	Predict GO terms from Neighborhoods
BP	GO:2000468	regulation of peroxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:2000469	negative regulation of peroxidase activity	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR015947	PUA-like_sf	331	507
IPR007728	Pre-SET_dom	541	635
IPR001214	SET_dom	654	786
IPR003105	SRA_YDG	348	499

External Links

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SOLTUB.AGRIA.G00000010428

Expression Profile

Co-expression Networks

Functional Annotation