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  5. SOLTUB.AGRIA.G00000010685

SOLTUB.AGRIA.G00000010685


Description : Replication protein A 70 kDa DNA-binding subunit B


Gene families : OG_02_0000001 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010685
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_70

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000001647 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005889 No alias Replication protein A 70 kDa DNA-binding subunit D 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000007607 No alias Replication protein A 70 kDa DNA-binding subunit B 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000016802 No alias Replication protein A 70 kDa DNA-binding subunit 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018543 No alias Unknown protein 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033439 No alias Replication protein A 70 kDa DNA-binding subunit B 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000041520 No alias Replication protein A 70 kDa DNA-binding subunit B 0.17 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001647 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005889 No alias Replication protein A 70 kDa DNA-binding subunit D 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000007607 No alias Replication protein A 70 kDa DNA-binding subunit B 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000016802 No alias Replication protein A 70 kDa DNA-binding subunit 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018543 No alias Unknown protein 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033439 No alias Replication protein A 70 kDa DNA-binding subunit B 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000041520 No alias Replication protein A 70 kDa DNA-binding subunit B 0.17 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000001647 No alias Replication protein A 70 kDa DNA-binding subunit B 0.05 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005889 No alias Replication protein A 70 kDa DNA-binding subunit D 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000007607 No alias Replication protein A 70 kDa DNA-binding subunit B 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000016802 No alias Replication protein A 70 kDa DNA-binding subunit 0.06 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000018543 No alias Unknown protein 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000033439 No alias Replication protein A 70 kDa DNA-binding subunit B 0.2 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000041520 No alias Replication protein A 70 kDa DNA-binding subunit B 0.17 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001763 morphogenesis of a branching structure IEP Predict GO terms from Neighborhoods
MF GO:0004252 serine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0009608 response to symbiont IEP Predict GO terms from Neighborhoods
BP GO:0009609 response to symbiotic bacterium IEP Predict GO terms from Neighborhoods
BP GO:0009610 response to symbiotic fungus IEP Predict GO terms from Neighborhoods
BP GO:0009682 induced systemic resistance IEP Predict GO terms from Neighborhoods
BP GO:0010101 post-embryonic root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010102 lateral root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010191 mucilage metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010223 secondary shoot formation IEP Predict GO terms from Neighborhoods
BP GO:0010346 shoot axis formation IEP Predict GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Predict GO terms from Neighborhoods
CC GO:0031012 extracellular matrix IEP Predict GO terms from Neighborhoods
BP GO:0048359 mucilage metabolic process involved in seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0080001 mucilage extrusion from seed coat IEP Predict GO terms from Neighborhoods
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR013955 Rep_factor-A_C 233 345
IPR012340 NA-bd_OB-fold 5 87
IPR012340 NA-bd_OB-fold 219 308
No external refs found!