SOLTUB.AGRIA.G00000010767

Description : DNA mismatch repair protein Msh3

Gene families : OG_02_0019143 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010767
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_92

Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	None	Extended
MF	GO:0000166	nucleotide binding	IEA	AHRD
BP	GO:0002200	somatic diversification of immune receptors	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002562	somatic diversification of immune receptors via germline recombination within a single locus	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	IEA	AHRD
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003697	single-stranded DNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	IEA	AHRD
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006312	mitotic recombination	IEA	AHRD
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007131	reciprocal meiotic recombination	IEA	AHRD
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016444	somatic cell DNA recombination	None	Extended
BP	GO:0016445	somatic diversification of immunoglobulins	None	Extended
BP	GO:0016447	somatic recombination of immunoglobulin gene segments	IEA	AHRD
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019237	centromeric DNA binding	IEA	AHRD
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030983	mismatched DNA binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
MF	GO:0032135	DNA insertion or deletion binding	None	Extended
MF	GO:0032138	single base insertion or deletion binding	None	Extended
MF	GO:0032139	dinucleotide insertion or deletion binding	None	Extended
MF	GO:0032142	single guanine insertion binding	IEA	AHRD
MF	GO:0032181	dinucleotide repeat insertion binding	IEA	AHRD
CC	GO:0032300	mismatch repair complex	None	Extended
CC	GO:0032302	MutSbeta complex	IEA	AHRD
BP	GO:0032781	positive regulation of ATP-dependent activity	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043085	positive regulation of catalytic activity	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043462	regulation of ATP-dependent activity	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043570	maintenance of DNA repeat elements	IEA	AHRD
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045910	negative regulation of DNA recombination	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051053	negative regulation of DNA metabolic process	None	Extended
BP	GO:0051095	regulation of helicase activity	None	Extended
BP	GO:0051096	positive regulation of helicase activity	IEA	AHRD
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009694	jasmonic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009696	salicylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
BP	GO:0018958	phenol-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080030	methyl indole-3-acetate esterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080031	methyl salicylate esterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080032	methyl jasmonate esterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR007696	DNA_mismatch_repair_MutS_core	435	766
IPR007695	DNA_mismatch_repair_MutS-lik_N	123	234
IPR036187	DNA_mismatch_repair_MutS_sf	434	772
IPR016151	DNA_mismatch_repair_MutS_N	116	231
IPR000432	DNA_mismatch_repair_MutS_C	821	1027
IPR027417	P-loop_NTPase	774	1027
IPR007860	DNA_mmatch_repair_MutS_con_dom	250	413

External Links

No external refs found!

SOLTUB.AGRIA.G00000010767

Expression Profile

Co-expression Networks

Functional Annotation