SOLTUB.AGRIA.G00000010924

Description : Pentatricopeptide repeat-containing protein

Gene families : OG_02_0005724 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010924
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_474

Type	GO Term	Name	Evidence	Source
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
BP	GO:0000963	mitochondrial RNA processing	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010214	seed coat development	IEA	AHRD
BP	GO:0010467	gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016553	base conversion or substitution editing	None	Extended
BP	GO:0016554	cytidine to uridine editing	IEA	AHRD
BP	GO:0016556	mRNA modification	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080156	mitochondrial mRNA modification	IEA	AHRD
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140053	mitochondrial gene expression	None	Extended
BP	GO:0140547	acquisition of seed longevity	IEA	AHRD
BP	GO:1900864	mitochondrial RNA modification	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000086	G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0003002	regionalization	IEP	Predict GO terms from Neighborhoods
BP	GO:0003013	circulatory system process	IEP	Predict GO terms from Neighborhoods
BP	GO:0003018	vascular process in circulatory system	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004519	endonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005319	lipid transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005548	phospholipid transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006862	nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006869	lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007389	pattern specification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008283	cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008361	regulation of cell size	IEP	Predict GO terms from Neighborhoods
MF	GO:0008525	phosphatidylcholine transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008559	ABC-type xenobiotic transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009606	tropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009629	response to gravity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009630	gravitropism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009637	response to blue light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009640	photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009735	response to cytokinin	IEP	Predict GO terms from Neighborhoods
BP	GO:0009914	hormone transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009926	auxin polar transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0009958	positive gravitropism	IEP	Predict GO terms from Neighborhoods
CC	GO:0009986	cell surface	IEP	Predict GO terms from Neighborhoods
BP	GO:0010051	xylem and phloem pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010218	response to far red light	IEP	Predict GO terms from Neighborhoods
BP	GO:0010232	vascular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010305	leaf vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010315	auxin export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0010328	auxin influx transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0010329	auxin efflux transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010359	regulation of anion channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010449	root meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010540	basipetal auxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010541	acropetal auxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015562	efflux transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015865	purine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015868	purine ribonucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015914	phospholipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016324	apical plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030587	sorocarp development	IEP	Predict GO terms from Neighborhoods
BP	GO:0031425	chloroplast RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0032368	regulation of lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032370	positive regulation of lipid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032371	regulation of sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032373	positive regulation of sterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032374	regulation of cholesterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032376	positive regulation of cholesterol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032409	regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032411	positive regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032412	regulation of ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032414	positive regulation of ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Predict GO terms from Neighborhoods
BP	GO:0034204	lipid translocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0034764	positive regulation of transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034765	regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034767	positive regulation of ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035266	meristem growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0035627	ceramide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0040007	growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042886	amide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042908	xenobiotic transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043270	positive regulation of ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043473	pigmentation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043476	pigment accumulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Predict GO terms from Neighborhoods
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Predict GO terms from Neighborhoods
BP	GO:0043480	pigment accumulation in tissues	IEP	Predict GO terms from Neighborhoods
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Predict GO terms from Neighborhoods
BP	GO:0044070	regulation of anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0044770	cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044772	mitotic cell cycle phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0044839	cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0045332	phospholipid translocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046581	intercellular canaliculus	IEP	Predict GO terms from Neighborhoods
BP	GO:0046618	xenobiotic export from cell	IEP	Predict GO terms from Neighborhoods
MF	GO:0046623	sphingolipid floppase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046624	sphingolipid transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046864	isoprenoid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0046865	terpenoid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048437	floral organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048443	stamen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048589	developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048767	root hair elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048827	phyllome development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048859	formation of anatomical boundary	IEP	Predict GO terms from Neighborhoods
BP	GO:0051503	adenine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051703	biological process involved in intraspecies interaction between organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0060918	auxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060919	auxin import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0070633	transepithelial transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070729	cyclic nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070730	cAMP transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072089	stem cell proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0080161	auxin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Predict GO terms from Neighborhoods
MF	GO:0090554	phosphatidylcholine floppase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0090555	phosphatidylethanolamine flippase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090691	formation of plant organ boundary	IEP	Predict GO terms from Neighborhoods
BP	GO:0097035	regulation of membrane lipid distribution	IEP	Predict GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0098739	import across plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0099038	ceramide floppase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0099039	sphingolipid translocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0099040	ceramide translocation	IEP	Predict GO terms from Neighborhoods
BP	GO:0099120	socially cooperative development	IEP	Predict GO terms from Neighborhoods
BP	GO:0099402	plant organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0140115	export across plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0140303	intramembrane lipid transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140326	ATPase-coupled intramembrane lipid transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140327	flippase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140328	floppase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140333	glycerophospholipid flippase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140359	ABC-type transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0150104	transport across blood-brain barrier	IEP	Predict GO terms from Neighborhoods
BP	GO:1900865	chloroplast RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:1901264	carbohydrate derivative transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901529	positive regulation of anion channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903793	positive regulation of anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903959	regulation of anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903961	positive regulation of anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905952	regulation of lipid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1905954	positive regulation of lipid localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1990961	xenobiotic detoxification by transmembrane export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1990962	xenobiotic transport across blood-brain barrier	IEP	Predict GO terms from Neighborhoods
BP	GO:2001225	regulation of chloride transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011990	TPR-like_helical_dom_sf	418	672
IPR002885	Pentatricopeptide_repeat	510	558
IPR002885	Pentatricopeptide_repeat	207	251
IPR002885	Pentatricopeptide_repeat	107	153
IPR002885	Pentatricopeptide_repeat	410	456
IPR002885	Pentatricopeptide_repeat	586	609
IPR032867	DYW_dom	688	809
IPR011990	TPR-like_helical_dom_sf	490	671
IPR002885	Pentatricopeptide_repeat	283	307
IPR002885	Pentatricopeptide_repeat	653	681
IPR002885	Pentatricopeptide_repeat	311	337
IPR002885	Pentatricopeptide_repeat	79	106
IPR002885	Pentatricopeptide_repeat	586	610
IPR002885	Pentatricopeptide_repeat	109	142
IPR002885	Pentatricopeptide_repeat	210	243
IPR002885	Pentatricopeptide_repeat	513	547
IPR002885	Pentatricopeptide_repeat	414	443
IPR002885	Pentatricopeptide_repeat	486	513
IPR002885	Pentatricopeptide_repeat	79	107
IPR002885	Pentatricopeptide_repeat	180	206

External Links

No external refs found!

SOLTUB.AGRIA.G00000010924

Expression Profile

Co-expression Networks

Functional Annotation