Description : Nuclear pore complex protein NDC1a
Gene families : OG_02_0008518 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010932 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_197 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000098 | sulfur amino acid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000117 | regulation of transcription involved in G2/M transition of mitotic cell cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000349 | generation of catalytic spliceosome for first transesterification step | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000393 | spliceosomal conformational changes to generate catalytic conformation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000775 | chromosome, centromeric region | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0000974 | Prp19 complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001161 | intronic transcription regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001162 | RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001217 | DNA-binding transcription repressor activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001578 | microtubule bundle formation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001709 | cell fate determination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0001824 | blastocyst development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003676 | nucleic acid binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003723 | RNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0003729 | mRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004311 | farnesyltranstransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004659 | prenyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004660 | protein farnesyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004661 | protein geranylgeranyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004662 | CAAX-protein geranylgeranyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0004663 | Rab geranylgeranyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005046 | KDEL sequence binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0005048 | signal sequence binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005654 | nucleoplasm | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005684 | U2-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005801 | cis-Golgi network | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005829 | cytosol | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005844 | polysome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005953 | CAAX-protein geranylgeranyltransferase complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005965 | protein farnesyltransferase complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006283 | transcription-coupled nucleotide-excision repair | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006351 | DNA-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006396 | RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006534 | cysteine metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006606 | protein import into nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006607 | NLS-bearing protein import into nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006890 | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007167 | enzyme-linked receptor protein signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007178 | transmembrane receptor protein serine/threonine kinase signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007179 | transforming growth factor beta receptor signaling pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007323 | peptide pheromone maturation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007443 | Malpighian tubule morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007510 | cardioblast cell fate determination | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008017 | microtubule binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008134 | transcription factor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008139 | nuclear localization sequence binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008318 | protein prenyltransferase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009071 | serine family amino acid catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009093 | cysteine catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009299 | mRNA transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009560 | embryo sac egg cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009890 | negative regulation of biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0015030 | Cajal body | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0015631 | tubulin binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016032 | viral process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016070 | RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016074 | sno(s)RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016587 | Isw1 complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016607 | nuclear speck | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0016846 | carbon-sulfur lyase activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0017069 | snRNA binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0017070 | U6 snRNA binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018342 | protein prenylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018343 | protein farnesylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0018344 | protein geranylgeranylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0018995 | host cellular component | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019003 | GDP binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019079 | viral genome replication | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019448 | L-cysteine catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019450 | L-cysteine catabolic process to pyruvate | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0021987 | cerebral cortex development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030098 | lymphocyte differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030217 | T cell differentiation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030331 | nuclear estrogen receptor binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030545 | signaling receptor regulator activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030548 | acetylcholine receptor regulator activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030581 | symbiont intracellular protein transport in host | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030621 | U4 snRNA binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030660 | Golgi-associated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030662 | coated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030663 | COPI-coated vesicle membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0030682 | mitigation of host defenses by symbiont | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030955 | potassium ion binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0030971 | receptor tyrosine kinase binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031010 | ISWI-type complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031110 | regulation of microtubule polymerization or depolymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031112 | positive regulation of microtubule polymerization or depolymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031113 | regulation of microtubule polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031116 | positive regulation of microtubule polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0031420 | alkali metal ion binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032040 | small-subunit processome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032106 | positive regulation of response to extracellular stimulus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032109 | positive regulation of response to nutrient levels | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032273 | positive regulation of protein polymerization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0032991 | protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0033218 | amide binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034247 | snoRNA splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0042110 | T cell activation | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0042277 | peptide binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0042995 | cell projection | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043014 | alpha-tubulin binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043112 | receptor metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0043144 | sno(s)RNA processing | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0043657 | host cell | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044273 | sulfur compound catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044282 | small molecule catabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045213 | neurotransmitter receptor metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045944 | positive regulation of transcription by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046439 | L-cysteine metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046794 | transport of virus | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046923 | ER retention sequence binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048467 | gynoecium development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048524 | positive regulation of viral process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048577 | negative regulation of short-day photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048587 | regulation of short-day photoperiodism, flowering | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051495 | positive regulation of cytoskeleton organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051769 | regulation of nitric-oxide synthase biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051770 | positive regulation of nitric-oxide synthase biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051771 | negative regulation of nitric-oxide synthase biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0052173 | response to defenses of other organism | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0052200 | response to host defenses | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060135 | maternal process involved in female pregnancy | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060236 | regulation of mitotic spindle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060562 | epithelial tube morphogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060913 | cardiac cell fate determination | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060962 | regulation of ribosomal protein gene transcription by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0060963 | positive regulation of ribosomal protein gene transcription by RNA polymerase II | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0061333 | renal tubule morphogenesis | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070227 | lymphocyte apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0070231 | T cell apoptotic process | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070300 | phosphatidic acid binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071001 | U4/U6 snRNP | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071005 | U2-type precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071007 | U2-type catalytic step 2 spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071011 | precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071014 | post-mRNA release spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0071887 | leukocyte apoptotic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0075136 | response to host | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0075506 | entry of viral genome into host nucleus through nuclear pore complex via importin | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0075732 | viral penetration into host nucleus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0075733 | intracellular transport of virus | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080034 | host response to induction by symbiont of tumor, nodule or growth in host | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080086 | stamen filament development | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0080146 | L-cysteine desulfhydrase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090043 | regulation of tubulin deacetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090044 | positive regulation of tubulin deacetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090045 | positive regulation of deacetylase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090169 | regulation of spindle assembly | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090224 | regulation of spindle organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090311 | regulation of protein deacetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090312 | positive regulation of protein deacetylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097354 | prenylation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0098926 | postsynaptic signal transduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0099527 | postsynapse to nucleus signaling pathway | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0099602 | neurotransmitter receptor regulator activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140104 | molecular carrier activity | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0150065 | regulation of deacetylase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900015 | regulation of cytokine production involved in inflammatory response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900017 | positive regulation of cytokine production involved in inflammatory response | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1901673 | regulation of mitotic spindle assembly | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1902494 | catalytic complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1902905 | positive regulation of supramolecular fiber organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903131 | mononuclear cell differentiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903832 | regulation of cellular response to amino acid starvation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903833 | positive regulation of cellular response to amino acid starvation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903900 | regulation of viral life cycle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1903902 | positive regulation of viral life cycle | IEP | Predict GO terms from Neighborhoods |
| MF | GO:1990782 | protein tyrosine kinase binding | IEP | Predict GO terms from Neighborhoods |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| No external refs found! |