SOLTUB.AGRIA.G00000011080

Description : Alanine--tRNA ligase

Gene families : OG_02_0004483 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011080
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_210

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEA	AHRD
MF	GO:0000166	nucleotide binding	None	Extended
BP	GO:0000959	mitochondrial RNA metabolic process	None	Extended
MF	GO:0002161	aminoacyl-tRNA editing activity	None	Extended
MF	GO:0002196	Ser-tRNA(Ala) hydrolase activity	IEA	AHRD
BP	GO:0003008	system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	None	Extended
MF	GO:0004813	alanine-tRNA ligase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
MF	GO:0005524	ATP binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	IEA	AHRD
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	None	Extended
BP	GO:0006419	alanyl-tRNA aminoacylation	None	Extended
BP	GO:0006448	regulation of translational elongation	None	Extended
BP	GO:0006450	regulation of translational fidelity	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009507	chloroplast	IEA	AHRD
CC	GO:0009536	plastid	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016597	amino acid binding	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0021680	cerebellar Purkinje cell layer development	IEA	AHRD
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043177	organic acid binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0043523	regulation of neuron apoptotic process	None	Extended
BP	GO:0043524	negative regulation of neuron apoptotic process	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	IEA	AHRD
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEA	AHRD
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050877	nervous system process	None	Extended
BP	GO:0050885	neuromuscular process controlling balance	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0050905	neuromuscular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070127	tRNA aminoacylation for mitochondrial protein translation	None	Extended
BP	GO:0070143	mitochondrial alanyl-tRNA aminoacylation	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:0106074	aminoacyl-tRNA metabolism involved in translational fidelity	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140018	regulation of cytoplasmic translational fidelity	IEA	AHRD
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1900247	regulation of cytoplasmic translational elongation	None	Extended
BP	GO:1901214	regulation of neuron death	None	Extended
BP	GO:1901215	negative regulation of neuron death	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1990762	cytoplasmic alanyl-tRNA aminoacylation	IEA	AHRD
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004816	asparagine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005677	chromatin silencing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	Predict GO terms from Neighborhoods
BP	GO:0006421	asparaginyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009910	negative regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010048	vernalization response	IEP	Predict GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0031490	chromatin DNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031519	PcG protein complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048586	regulation of long-day photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0070734	histone H3-K27 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:2000242	negative regulation of reproductive process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR018163	Thr/Ala-tRNA-synth_IIc_edit	1148	1324
IPR009000	Transl_B-barrel_sf	1083	1148
IPR018164	Ala-tRNA-synth_IIc_N	612	889
IPR018164	Ala-tRNA-synth_IIc_N	977	1149
IPR003891	Initiation_fac_eIF4g_MI	288	389
IPR016024	ARM-type_fold	56	201
IPR018162	Ala-tRNA-ligase_IIc_anticod-bd	745	1028
IPR012947	tRNA_SAD	1250	1308
IPR003156	DHHA1_dom	1365	1510
IPR003890	MIF4G-like_typ-3	59	201

External Links

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SOLTUB.AGRIA.G00000011080

Expression Profile

Co-expression Networks

Functional Annotation