SOLTUB.AGRIA.G00000011085

Description : Zinc finger CCCH domain-containing protein 56

Gene families : OG_02_0008483 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000011085
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_223

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000011187	No alias	Zinc finger CCCH domain-containing protein 56	0.11	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000011187	No alias	Zinc finger CCCH domain-containing protein 56	0.11	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000011187	No alias	Zinc finger CCCH domain-containing protein 56	0.11	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005216	ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005253	anion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006820	anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009705	plant-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0009975	cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010044	response to aluminum ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010118	stomatal movement	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015140	malate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015740	C4-dicarboxylate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015743	malate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016036	cellular response to phosphate starvation	IEP	Predict GO terms from Neighborhoods
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0035618	root hair	IEP	Predict GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071423	malate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090332	stomatal closure	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR041367	Znf-CCCH_4	172	194
IPR000571	Znf_CCCH	93	117
IPR000571	Znf_CCCH	228	253
IPR036855	Znf_CCCH_sf	167	195
IPR036855	Znf_CCCH_sf	90	123
IPR036855	Znf_CCCH_sf	224	258

External Links

No external refs found!

SOLTUB.AGRIA.G00000011085

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation