Coexpression cluster: Cluster_15 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010286 heat acclimation 7.21% (8/111) 3.27 2e-06 0.001245
GO:0035967 cellular response to topologically incorrect protein 4.5% (5/111) 4.61 2e-06 0.001846
GO:1900458 negative regulation of brassinosteroid mediated signaling pathway 3.6% (4/111) 4.88 1.1e-05 0.002831
GO:0006986 response to unfolded protein 4.5% (5/111) 4.14 1e-05 0.003109
GO:0034605 cellular response to heat 7.21% (8/111) 3.29 2e-06 0.003373
GO:0034620 cellular response to unfolded protein 3.6% (4/111) 5.0 8e-06 0.003487
GO:1905157 positive regulation of photosynthesis 2.7% (3/111) 6.14 1e-05 0.003602
GO:0003690 double-stranded DNA binding 16.22% (18/111) 1.56 3.5e-05 0.00703
GO:0035966 response to topologically incorrect protein 4.5% (5/111) 3.78 3.4e-05 0.007692
GO:0045211 postsynaptic membrane 2.7% (3/111) 5.29 6.2e-05 0.011295
GO:0010117 photoprotection 2.7% (3/111) 5.19 7.7e-05 0.012774
GO:0001067 transcription regulatory region nucleic acid binding 14.41% (16/111) 1.54 0.000121 0.015796
GO:1990837 sequence-specific double-stranded DNA binding 14.41% (16/111) 1.51 0.000152 0.016237
GO:0000976 transcription cis-regulatory region binding 14.41% (16/111) 1.54 0.000117 0.016319
GO:1902448 positive regulation of shade avoidance 2.7% (3/111) 4.92 0.000137 0.016573
GO:2000306 positive regulation of photomorphogenesis 2.7% (3/111) 4.8 0.000175 0.01676
GO:0043565 sequence-specific DNA binding 16.22% (18/111) 1.43 0.00011 0.016766
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding 6.31% (7/111) 2.63 0.000147 0.016777
GO:0071483 cellular response to blue light 3.6% (4/111) 3.88 0.000167 0.016927
GO:0001666 response to hypoxia 7.21% (8/111) 2.26 0.000291 0.020375
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 5.41% (6/111) 2.76 0.000276 0.020979
GO:1901420 negative regulation of response to alcohol 5.41% (6/111) 2.76 0.000276 0.020979
GO:1905958 negative regulation of cellular response to alcohol 5.41% (6/111) 2.76 0.000276 0.020979
GO:0010100 negative regulation of photomorphogenesis 2.7% (3/111) 4.55 0.00029 0.021118
GO:0140110 transcription regulator activity 14.41% (16/111) 1.41 0.000318 0.021447
GO:0010648 negative regulation of cell communication 10.81% (12/111) 1.68 0.000371 0.022502
GO:0023057 negative regulation of signaling 10.81% (12/111) 1.69 0.000366 0.022963
GO:1902446 regulation of shade avoidance 2.7% (3/111) 4.62 0.000253 0.023053
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding 6.31% (7/111) 2.42 0.000359 0.02335
GO:0090351 seedling development 2.7% (3/111) 4.59 0.000271 0.023513
GO:0036293 response to decreased oxygen levels 7.21% (8/111) 2.17 0.000435 0.024776
GO:0003700 DNA-binding transcription factor activity 12.61% (14/111) 1.5 0.000426 0.024997
GO:0055065 metal ion homeostasis 7.21% (8/111) 2.14 0.000483 0.025875
GO:0009637 response to blue light 5.41% (6/111) 2.61 0.000471 0.025988
GO:0010099 regulation of photomorphogenesis 3.6% (4/111) 3.43 0.000547 0.027662
GO:0055080 cation homeostasis 8.11% (9/111) 1.96 0.000543 0.028244
GO:0070482 response to oxygen levels 7.21% (8/111) 2.09 0.000621 0.030573
GO:0010200 response to chitin 8.11% (9/111) 1.93 0.00064 0.030648
GO:0010262 somatic embryogenesis 2.7% (3/111) 4.14 0.000678 0.031651
GO:0009701 isoflavonoid phytoalexin biosynthetic process 1.8% (2/111) 5.55 0.000819 0.031736
GO:0030746 isoflavone 4'-O-methyltransferase activity 1.8% (2/111) 5.55 0.000819 0.031736
GO:0046289 isoflavonoid phytoalexin metabolic process 1.8% (2/111) 5.55 0.000819 0.031736
GO:0000987 cis-regulatory region sequence-specific DNA binding 6.31% (7/111) 2.21 0.000845 0.032053
GO:1901419 regulation of response to alcohol 7.21% (8/111) 2.03 0.000812 0.03361
GO:1905957 regulation of cellular response to alcohol 7.21% (8/111) 2.03 0.000812 0.03361
GO:0009787 regulation of abscisic acid-activated signaling pathway 7.21% (8/111) 2.03 0.000797 0.034559
GO:0032268 regulation of cellular protein metabolic process 2.7% (3/111) 4.07 0.000782 0.034723
GO:0009408 response to heat 9.01% (10/111) 1.76 0.000767 0.034909
GO:0003677 DNA binding 18.02% (20/111) 1.09 0.000952 0.035393
GO:0030007 cellular potassium ion homeostasis 2.7% (3/111) 3.92 0.001062 0.036497
GO:0098771 inorganic ion homeostasis 8.11% (9/111) 1.82 0.00105 0.03676
GO:0009968 negative regulation of signal transduction 9.91% (11/111) 1.61 0.00101 0.036776
GO:0010243 response to organonitrogen compound 11.71% (13/111) 1.44 0.001036 0.036988
GO:0002161 aminoacyl-tRNA editing activity 1.8% (2/111) 5.14 0.001468 0.049521
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_37 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_38 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_45 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_75 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_91 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_114 0.019 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_125 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_160 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_170 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (111) (download table)

InterPro Domains

GO Terms

Family Terms