Coexpression cluster: Cluster_118 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006139 nucleobase-containing compound metabolic process 40.52% (47/116) 2.0 0.0 0.0
GO:0090304 nucleic acid metabolic process 37.07% (43/116) 2.17 0.0 0.0
GO:0090617 mitochondrial mRNA 5'-end processing 7.76% (9/116) 6.61 0.0 0.0
GO:0046483 heterocycle metabolic process 42.24% (49/116) 1.68 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 42.24% (49/116) 1.63 0.0 0.0
GO:0043170 macromolecule metabolic process 53.45% (62/116) 1.26 0.0 0.0
GO:0090615 mitochondrial mRNA processing 7.76% (9/116) 5.46 0.0 0.0
GO:0016070 RNA metabolic process 26.72% (31/116) 2.16 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 42.24% (49/116) 1.49 0.0 0.0
GO:0006396 RNA processing 22.41% (26/116) 2.37 0.0 0.0
GO:0000966 RNA 5'-end processing 6.9% (8/116) 5.49 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 43.1% (50/116) 1.38 0.0 0.0
GO:0006807 nitrogen compound metabolic process 57.76% (67/116) 1.05 0.0 0.0
GO:0010467 gene expression 10.34% (12/116) 3.96 0.0 0.0
GO:0000963 mitochondrial RNA processing 9.48% (11/116) 4.16 0.0 0.0
GO:0004016 adenylate cyclase activity 6.9% (8/116) 5.29 0.0 0.0
GO:0044238 primary metabolic process 61.21% (71/116) 0.94 0.0 0.0
GO:0140053 mitochondrial gene expression 9.48% (11/116) 4.04 0.0 0.0
GO:0005739 mitochondrion 22.41% (26/116) 2.13 0.0 0.0
GO:0000959 mitochondrial RNA metabolic process 11.21% (13/116) 3.45 0.0 0.0
GO:0009451 RNA modification 12.93% (15/116) 3.04 0.0 0.0
GO:0080156 mitochondrial mRNA modification 8.62% (10/116) 4.02 0.0 0.0
GO:1900864 mitochondrial RNA modification 9.48% (11/116) 3.71 0.0 0.0
GO:0003676 nucleic acid binding 37.07% (43/116) 1.35 0.0 0.0
GO:0016849 phosphorus-oxygen lyase activity 6.9% (8/116) 4.31 0.0 1e-06
GO:0016556 mRNA modification 8.62% (10/116) 3.59 0.0 1e-06
GO:0071704 organic substance metabolic process 62.07% (72/116) 0.75 0.0 3e-06
GO:0009975 cyclase activity 6.9% (8/116) 4.0 0.0 4e-06
GO:0006397 mRNA processing 10.34% (12/116) 2.93 0.0 5e-06
GO:0016071 mRNA metabolic process 12.93% (15/116) 2.37 0.0 1.7e-05
GO:0044237 cellular metabolic process 56.9% (66/116) 0.75 0.0 2.4e-05
GO:0003723 RNA binding 20.69% (24/116) 1.67 0.0 2.7e-05
GO:0043412 macromolecule modification 29.31% (34/116) 1.29 0.0 3.1e-05
GO:0044260 cellular macromolecule metabolic process 24.14% (28/116) 1.46 1e-06 4.3e-05
GO:1901363 heterocyclic compound binding 45.69% (53/116) 0.88 1e-06 4.9e-05
GO:0006259 DNA metabolic process 12.93% (15/116) 2.21 1e-06 5.7e-05
GO:0097159 organic cyclic compound binding 45.69% (53/116) 0.87 1e-06 5.8e-05
GO:0008152 metabolic process 62.07% (72/116) 0.64 1e-06 5.8e-05
GO:0006281 DNA repair 9.48% (11/116) 2.5 4e-06 0.000261
GO:0032259 methylation 8.62% (10/116) 2.6 7e-06 0.000386
GO:0043229 intracellular organelle 60.34% (70/116) 0.6 7e-06 0.000401
GO:0043226 organelle 60.34% (70/116) 0.59 9e-06 0.000493
GO:0009845 seed germination 6.9% (8/116) 2.97 9e-06 0.0005
GO:0008168 methyltransferase activity 7.76% (9/116) 2.64 1.6e-05 0.000834
GO:0006974 cellular response to DNA damage stimulus 10.34% (12/116) 2.12 2.1e-05 0.001074
GO:0016741 transferase activity, transferring one-carbon groups 7.76% (9/116) 2.59 2.1e-05 0.001085
GO:0000712 resolution of meiotic recombination intermediates 2.59% (3/116) 5.59 3.3e-05 0.001579
GO:0043231 intracellular membrane-bounded organelle 53.45% (62/116) 0.61 3.2e-05 0.001603
GO:0009987 cellular process 70.69% (82/116) 0.44 3.8e-05 0.001792
GO:0043227 membrane-bounded organelle 53.45% (62/116) 0.6 4.7e-05 0.002198
GO:0016829 lyase activity 9.48% (11/116) 2.12 5e-05 0.002228
GO:0008173 RNA methyltransferase activity 3.45% (4/116) 4.33 4.9e-05 0.002229
GO:2001022 positive regulation of response to DNA damage stimulus 3.45% (4/116) 4.31 5.2e-05 0.002274
GO:0051251 positive regulation of lymphocyte activation 3.45% (4/116) 4.07 9.8e-05 0.004217
GO:0001510 RNA methylation 3.45% (4/116) 4.04 0.000108 0.004558
GO:2001020 regulation of response to DNA damage stimulus 5.17% (6/116) 2.99 0.000118 0.004836
GO:0006282 regulation of DNA repair 4.31% (5/116) 3.41 0.000117 0.004844
GO:0110165 cellular anatomical entity 76.72% (89/116) 0.35 0.000122 0.004906
GO:0002696 positive regulation of leukocyte activation 3.45% (4/116) 3.95 0.000136 0.005257
GO:0043414 macromolecule methylation 6.03% (7/116) 2.65 0.000135 0.00531
GO:0043073 germ cell nucleus 2.59% (3/116) 4.89 0.000142 0.005436
GO:0050867 positive regulation of cell activation 3.45% (4/116) 3.84 0.000183 0.006859
GO:0051249 regulation of lymphocyte activation 3.45% (4/116) 3.83 0.00019 0.007031
GO:0140640 catalytic activity, acting on a nucleic acid 9.48% (11/116) 1.87 0.000224 0.008142
GO:0031156 regulation of sorocarp development 2.59% (3/116) 4.62 0.00025 0.008815
GO:0005575 cellular_component 76.72% (89/116) 0.33 0.000247 0.008838
GO:0061982 meiosis I cell cycle process 3.45% (4/116) 3.59 0.000357 0.012408
GO:0008150 biological_process 76.72% (89/116) 0.32 0.000368 0.012607
GO:0000405 bubble DNA binding 1.72% (2/116) 6.07 0.000387 0.013046
GO:0006298 mismatch repair 2.59% (3/116) 4.37 0.000425 0.014119
GO:0003824 catalytic activity 48.28% (56/116) 0.55 0.000456 0.014522
GO:0045990 carbon catabolite regulation of transcription 2.59% (3/116) 4.34 0.000451 0.014571
GO:0002694 regulation of leukocyte activation 3.45% (4/116) 3.5 0.00045 0.014733
GO:0051054 positive regulation of DNA metabolic process 4.31% (5/116) 2.92 0.000554 0.017434
GO:0016423 tRNA (guanine) methyltransferase activity 1.72% (2/116) 5.81 0.000565 0.017535
GO:0050865 regulation of cell activation 3.45% (4/116) 3.4 0.000592 0.018117
GO:0045739 positive regulation of DNA repair 2.59% (3/116) 4.15 0.000663 0.020036
GO:1903046 meiotic cell cycle process 6.9% (8/116) 2.07 0.000681 0.020328
GO:0045911 positive regulation of DNA recombination 2.59% (3/116) 4.12 0.000698 0.020549
GO:0035825 homologous recombination 2.59% (3/116) 4.1 0.000733 0.021334
GO:0031670 cellular response to nutrient 2.59% (3/116) 4.05 0.000808 0.023226
GO:0003674 molecular_function 74.14% (86/116) 0.31 0.000828 0.023491
GO:0009128 purine nucleoside monophosphate catabolic process 1.72% (2/116) 5.49 0.000894 0.024764
GO:0009169 purine ribonucleoside monophosphate catabolic process 1.72% (2/116) 5.49 0.000894 0.024764
GO:1900182 positive regulation of protein localization to nucleus 2.59% (3/116) 3.96 0.000973 0.026632
GO:2000905 negative regulation of starch metabolic process 1.72% (2/116) 5.4 0.00102 0.027589
GO:0048296 regulation of isotype switching to IgA isotypes 1.72% (2/116) 5.23 0.001295 0.033859
GO:0048298 positive regulation of isotype switching to IgA isotypes 1.72% (2/116) 5.23 0.001295 0.033859
GO:0051052 regulation of DNA metabolic process 6.03% (7/116) 2.11 0.001283 0.034325
GO:0010212 response to ionizing radiation 3.45% (4/116) 3.07 0.001356 0.035066
GO:0007260 tyrosine phosphorylation of STAT protein 1.72% (2/116) 5.15 0.001445 0.03576
GO:0001673 male germ cell nucleus 1.72% (2/116) 5.15 0.001445 0.03576
GO:1990918 double-strand break repair involved in meiotic recombination 1.72% (2/116) 5.15 0.001445 0.03576
GO:0009158 ribonucleoside monophosphate catabolic process 1.72% (2/116) 5.15 0.001445 0.03576
GO:0022402 cell cycle process 10.34% (12/116) 1.43 0.001665 0.039943
GO:0090734 site of DNA damage 2.59% (3/116) 3.7 0.001648 0.040356
GO:0003677 DNA binding 17.24% (20/116) 1.03 0.001665 0.040357
GO:0009125 nucleoside monophosphate catabolic process 1.72% (2/116) 5.0 0.001767 0.041961
GO:1904894 positive regulation of receptor signaling pathway via STAT 1.72% (2/116) 4.94 0.00194 0.045602
GO:0045191 regulation of isotype switching 1.72% (2/116) 4.87 0.002121 0.048861
GO:0045830 positive regulation of isotype switching 1.72% (2/116) 4.87 0.002121 0.048861
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_176 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (116) (download table)

InterPro Domains

GO Terms

Family Terms