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Coexpression cluster: Cluster_269 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032991 protein-containing complex 39.22% (20/51) 1.67 1e-06 0.001546
GO:0018193 peptidyl-amino acid modification 15.69% (8/51) 2.59 4.8e-05 0.013372
GO:0005515 protein binding 66.67% (34/51) 0.82 2.9e-05 0.013416
GO:0042981 regulation of apoptotic process 13.73% (7/51) 2.87 4.5e-05 0.015761
GO:0016604 nuclear body 13.73% (7/51) 2.98 2.7e-05 0.019071
GO:0036211 protein modification process 29.41% (15/51) 1.53 0.000114 0.026589
GO:0043228 non-membrane-bounded organelle 25.49% (13/51) 1.53 0.000375 0.027512
GO:0043232 intracellular non-membrane-bounded organelle 25.49% (13/51) 1.53 0.000375 0.027512
GO:0051641 cellular localization 21.57% (11/51) 1.87 0.000158 0.027552
GO:0065007 biological regulation 62.75% (32/51) 0.77 0.00014 0.027832
GO:0042352 GDP-L-fucose salvage 1.96% (1/51) 9.58 0.001305 0.028439
GO:0047341 fucose-1-phosphate guanylyltransferase activity 1.96% (1/51) 9.58 0.001305 0.028439
GO:0050201 fucokinase activity 1.96% (1/51) 9.58 0.001305 0.028439
GO:0031153 slug development involved in sorocarp development 1.96% (1/51) 9.58 0.001305 0.028439
GO:0150012 positive regulation of neuron projection arborization 1.96% (1/51) 9.58 0.001305 0.028439
GO:1905492 positive regulation of branching morphogenesis of a nerve 1.96% (1/51) 9.58 0.001305 0.028439
GO:2000172 regulation of branching morphogenesis of a nerve 1.96% (1/51) 9.58 0.001305 0.028439
GO:0071528 tRNA re-export from nucleus 1.96% (1/51) 9.58 0.001305 0.028439
GO:0007634 optokinetic behavior 1.96% (1/51) 9.58 0.001305 0.028439
GO:0060036 notochord cell vacuolation 1.96% (1/51) 9.58 0.001305 0.028439
GO:0030892 mitotic cohesin complex 1.96% (1/51) 9.58 0.001305 0.028439
GO:0004057 arginyltransferase activity 1.96% (1/51) 9.58 0.001305 0.028439
GO:0021796 cerebral cortex regionalization 1.96% (1/51) 9.58 0.001305 0.028439
GO:0001109 promoter clearance during DNA-templated transcription 1.96% (1/51) 9.58 0.001305 0.028439
GO:0001111 RNA polymerase II promoter clearance 1.96% (1/51) 9.58 0.001305 0.028439
GO:0001112 DNA-templated transcription open complex formation 1.96% (1/51) 9.58 0.001305 0.028439
GO:0001113 transcription open complex formation at RNA polymerase II promoter 1.96% (1/51) 9.58 0.001305 0.028439
GO:0001120 protein-DNA complex remodeling 1.96% (1/51) 9.58 0.001305 0.028439
GO:0003972 RNA ligase (ATP) activity 1.96% (1/51) 9.58 0.001305 0.028439
GO:0008452 RNA ligase activity 1.96% (1/51) 9.58 0.001305 0.028439
GO:0042245 RNA repair 1.96% (1/51) 9.58 0.001305 0.028439
GO:2000643 positive regulation of early endosome to late endosome transport 1.96% (1/51) 9.58 0.001305 0.028439
GO:0009889 regulation of biosynthetic process 29.41% (15/51) 1.2 0.001353 0.028602
GO:0008104 protein localization 15.69% (8/51) 1.88 0.001341 0.028774
GO:0050789 regulation of biological process 58.82% (30/51) 0.81 0.000187 0.029057
GO:0019538 protein metabolic process 33.33% (17/51) 1.31 0.000233 0.029547
GO:0005488 binding 74.51% (38/51) 0.57 0.000318 0.029614
GO:0097708 intracellular vesicle 17.65% (9/51) 1.72 0.001424 0.029646
GO:0005768 endosome 15.69% (8/51) 2.17 0.000365 0.029915
GO:0006473 protein acetylation 7.84% (4/51) 3.77 0.000216 0.03014
GO:0099023 vesicle tethering complex 5.88% (3/51) 4.47 0.000347 0.030274
GO:0006892 post-Golgi vesicle-mediated transport 5.88% (3/51) 3.74 0.001493 0.030629
GO:0043170 macromolecule metabolic process 45.1% (23/51) 1.01 0.000264 0.03073
GO:0010941 regulation of cell death 13.73% (7/51) 2.03 0.001525 0.030828
GO:0050794 regulation of cellular process 52.94% (27/51) 0.86 0.000317 0.031588
GO:0043543 protein acylation 7.84% (4/51) 3.48 0.000462 0.032214
GO:0031982 vesicle 19.61% (10/51) 1.73 0.000686 0.032999
GO:1902494 catalytic complex 17.65% (9/51) 1.86 0.000714 0.033178
GO:0043412 macromolecule modification 29.41% (15/51) 1.3 0.00068 0.03386
GO:0018205 peptidyl-lysine modification 9.8% (5/51) 3.07 0.000316 0.033919
GO:0060255 regulation of macromolecule metabolic process 35.29% (18/51) 1.16 0.000524 0.034777
GO:0043067 regulation of programmed cell death 13.73% (7/51) 2.28 0.000551 0.034928
GO:0010556 regulation of macromolecule biosynthetic process 27.45% (14/51) 1.36 0.000679 0.035064
GO:0032502 developmental process 49.02% (25/51) 0.86 0.000655 0.035119
GO:0051171 regulation of nitrogen compound metabolic process 31.37% (16/51) 1.11 0.001772 0.035306
GO:0140513 nuclear protein-containing complex 15.69% (8/51) 2.04 0.000639 0.035641
GO:0045202 synapse 9.8% (5/51) 2.86 0.000621 0.036109
GO:0007034 vacuolar transport 7.84% (4/51) 3.37 0.000609 0.036909
GO:0006354 DNA-templated transcription elongation 3.92% (2/51) 4.97 0.001887 0.037081
GO:0006508 proteolysis 13.73% (7/51) 1.95 0.002055 0.039276
GO:0019222 regulation of metabolic process 37.25% (19/51) 0.95 0.002039 0.039497
GO:0016755 aminoacyltransferase activity 3.92% (2/51) 5.3 0.001199 0.04182
GO:0031589 cell-substrate adhesion 3.92% (2/51) 5.26 0.001261 0.04189
GO:0006807 nitrogen compound metabolic process 49.02% (25/51) 0.81 0.001119 0.042207
GO:0005770 late endosome 5.88% (3/51) 3.45 0.002633 0.042708
GO:0018394 peptidyl-lysine acetylation 5.88% (3/51) 3.45 0.002633 0.042708
GO:0048523 negative regulation of cellular process 27.45% (14/51) 1.29 0.001105 0.042831
GO:0080090 regulation of primary metabolic process 33.33% (17/51) 1.1 0.00126 0.042873
GO:0070647 protein modification by small protein conjugation or removal 13.73% (7/51) 2.09 0.001199 0.042875
GO:0031410 cytoplasmic vesicle 17.65% (9/51) 1.76 0.001171 0.04299
GO:0006511 ubiquitin-dependent protein catabolic process 9.8% (5/51) 2.38 0.002699 0.043276
GO:0048522 positive regulation of cellular process 31.37% (16/51) 1.18 0.001027 0.043399
GO:1990234 transferase complex 11.76% (6/51) 2.09 0.002776 0.043505
GO:0070727 cellular macromolecule localization 15.69% (8/51) 1.72 0.002627 0.043635
GO:0031326 regulation of cellular biosynthetic process 29.41% (15/51) 1.25 0.000971 0.043709
GO:0019941 modification-dependent protein catabolic process 9.8% (5/51) 2.37 0.002762 0.04379
GO:0016598 protein arginylation 1.96% (1/51) 8.58 0.002608 0.04383
GO:0004832 valine-tRNA ligase activity 1.96% (1/51) 8.58 0.002608 0.04383
GO:0006438 valyl-tRNA aminoacylation 1.96% (1/51) 8.58 0.002608 0.04383
GO:0046548 retinal rod cell development 1.96% (1/51) 8.58 0.002608 0.04383
GO:2000641 regulation of early endosome to late endosome transport 1.96% (1/51) 8.58 0.002608 0.04383
GO:0005856 cytoskeleton 9.8% (5/51) 2.7 0.001005 0.043832
GO:0048519 negative regulation of biological process 33.33% (17/51) 1.12 0.0011 0.04385
GO:0007155 cell adhesion 5.88% (3/51) 3.9 0.001087 0.044607
GO:0000151 ubiquitin ligase complex 7.84% (4/51) 2.75 0.002963 0.044928
GO:0030665 clathrin-coated vesicle membrane 3.92% (2/51) 4.65 0.002908 0.045069
GO:0016070 RNA metabolic process 17.65% (9/51) 1.56 0.002947 0.045184
GO:0016573 histone acetylation 5.88% (3/51) 3.48 0.002494 0.046383
GO:0048513 animal organ development 11.76% (6/51) 2.05 0.003093 0.046389
GO:0006475 internal protein amino acid acetylation 5.88% (3/51) 3.46 0.002598 0.046458
GO:0018393 internal peptidyl-lysine acetylation 5.88% (3/51) 3.46 0.002598 0.046458
GO:0051253 negative regulation of RNA metabolic process 13.73% (7/51) 1.91 0.002469 0.046546
GO:0005575 cellular_component 80.39% (41/51) 0.4 0.002548 0.046767
GO:0008150 biological_process 80.39% (41/51) 0.39 0.003172 0.047073
GO:0043632 modification-dependent macromolecule catabolic process 9.8% (5/51) 2.32 0.003219 0.047274
GO:0005769 early endosome 5.88% (3/51) 3.33 0.003318 0.047725
GO:0016605 PML body 3.92% (2/51) 4.56 0.003294 0.047865
GO:0033365 protein localization to organelle 9.8% (5/51) 2.29 0.003534 0.049297
GO:0051252 regulation of RNA metabolic process 23.53% (12/51) 1.25 0.003518 0.049569
GO:0006896 Golgi to vacuole transport 3.92% (2/51) 4.49 0.003598 0.049702
GO:0044238 primary metabolic process 50.98% (26/51) 0.68 0.003503 0.049861
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_44 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_237 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (51) (download table)

InterPro Domains

GO Terms

Family Terms