Coexpression cluster: Cluster_207 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0042170 plastid membrane 23.64% (13/55) 3.46 0.0 0.0
GO:0009773 photosynthetic electron transport in photosystem I 9.09% (5/55) 6.99 0.0 0.0
GO:0009767 photosynthetic electron transport chain 9.09% (5/55) 5.8 0.0 5e-06
GO:0034357 photosynthetic membrane 16.36% (9/55) 3.59 0.0 6e-06
GO:0042651 thylakoid membrane 16.36% (9/55) 3.61 0.0 7e-06
GO:0055035 plastid thylakoid membrane 16.36% (9/55) 3.67 0.0 7e-06
GO:0009535 chloroplast thylakoid membrane 16.36% (9/55) 3.69 0.0 8e-06
GO:0009570 chloroplast stroma 18.18% (10/55) 2.99 0.0 4.5e-05
GO:0009532 plastid stroma 18.18% (10/55) 2.93 1e-06 5.6e-05
GO:1904963 regulation of phytol biosynthetic process 3.64% (2/55) 9.47 2e-06 0.000144
GO:1904964 positive regulation of phytol biosynthetic process 3.64% (2/55) 9.47 2e-06 0.000144
GO:0016168 chlorophyll binding 7.27% (4/55) 5.32 3e-06 0.000216
GO:0019253 reductive pentose-phosphate cycle 5.45% (3/55) 6.25 8e-06 0.000529
GO:0006091 generation of precursor metabolites and energy 12.73% (7/55) 3.16 1.3e-05 0.000762
GO:0019685 photosynthesis, dark reaction 5.45% (3/55) 5.97 1.5e-05 0.000833
GO:0046136 positive regulation of vitamin metabolic process 3.64% (2/55) 8.15 1.9e-05 0.00088
GO:1904965 regulation of vitamin E biosynthetic process 3.64% (2/55) 8.15 1.9e-05 0.00088
GO:1904966 positive regulation of vitamin E biosynthetic process 3.64% (2/55) 8.15 1.9e-05 0.00088
GO:0022900 electron transport chain 9.09% (5/55) 3.88 2.4e-05 0.001014
GO:0015742 alpha-ketoglutarate transport 3.64% (2/55) 7.67 4.1e-05 0.001509
GO:0033838 flavonol-3-O-glucoside glucosyltransferase activity 3.64% (2/55) 7.67 4.1e-05 0.001509
GO:0051566 anthocyanidin-3-glucoside rhamnosyltransferase activity 3.64% (2/55) 7.67 4.1e-05 0.001509
GO:0009579 thylakoid 9.09% (5/55) 3.61 5.7e-05 0.001852
GO:0031976 plastid thylakoid 7.27% (4/55) 4.25 5.9e-05 0.001868
GO:0009534 chloroplast thylakoid 7.27% (4/55) 4.27 5.6e-05 0.00192
GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity 3.64% (2/55) 7.47 5.4e-05 0.001923
GO:0015131 oxaloacetate transmembrane transporter activity 3.64% (2/55) 7.3 7e-05 0.001959
GO:0015139 alpha-ketoglutarate transmembrane transporter activity 3.64% (2/55) 7.3 7e-05 0.001959
GO:0019676 ammonia assimilation cycle 3.64% (2/55) 7.3 7e-05 0.001959
GO:0009503 thylakoid light-harvesting complex 3.64% (2/55) 7.15 8.7e-05 0.002365
GO:1901038 cyanidin 3-O-glucoside metabolic process 3.64% (2/55) 7.01 0.000106 0.002795
GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone) 3.64% (2/55) 6.89 0.000127 0.003148
GO:0030076 light-harvesting complex 3.64% (2/55) 6.89 0.000127 0.003148
GO:0009526 plastid envelope 12.73% (7/55) 2.56 0.000173 0.004166
GO:0009523 photosystem II 5.45% (3/55) 4.7 0.000216 0.005037
GO:0071395 cellular response to jasmonic acid stimulus 3.64% (2/55) 6.47 0.00023 0.005227
GO:0006006 glucose metabolic process 5.45% (3/55) 4.65 0.00024 0.005298
GO:0018298 obsolete protein-chromophore linkage 5.45% (3/55) 4.58 0.000275 0.005907
GO:0019740 nitrogen utilization 3.64% (2/55) 6.3 0.000293 0.005988
GO:0006002 fructose 6-phosphate metabolic process 3.64% (2/55) 6.3 0.000293 0.005988
GO:0030388 fructose 1,6-bisphosphate metabolic process 3.64% (2/55) 6.23 0.000327 0.006523
GO:0043495 protein-membrane adaptor activity 3.64% (2/55) 6.15 0.000363 0.007069
GO:0015140 malate transmembrane transporter activity 3.64% (2/55) 6.01 0.000441 0.007833
GO:0071423 malate transmembrane transport 3.64% (2/55) 6.01 0.000441 0.007833
GO:0071368 cellular response to cytokinin stimulus 3.64% (2/55) 6.01 0.000441 0.007833
GO:0015979 photosynthesis 5.45% (3/55) 4.37 0.000422 0.008018
GO:0006000 fructose metabolic process 3.64% (2/55) 5.89 0.000526 0.00877
GO:0050308 sugar-phosphatase activity 3.64% (2/55) 5.89 0.000526 0.00877
GO:0009521 photosystem 5.45% (3/55) 4.28 0.000511 0.008889
GO:1902326 positive regulation of chlorophyll biosynthetic process 3.64% (2/55) 5.83 0.000571 0.00915
GO:0005986 sucrose biosynthetic process 3.64% (2/55) 5.83 0.000571 0.00915
GO:0009750 response to fructose 5.45% (3/55) 4.2 0.000597 0.00938
GO:0015743 malate transport 3.64% (2/55) 5.72 0.000667 0.010093
GO:1901465 positive regulation of tetrapyrrole biosynthetic process 3.64% (2/55) 5.72 0.000667 0.010093
GO:1902930 regulation of alcohol biosynthetic process 5.45% (3/55) 4.07 0.000777 0.011538
GO:0031967 organelle envelope 12.73% (7/55) 2.16 0.000913 0.012648
GO:0031975 envelope 12.73% (7/55) 2.16 0.000913 0.012648
GO:0005313 L-glutamate transmembrane transporter activity 3.64% (2/55) 5.47 0.000938 0.012778
GO:0009941 chloroplast envelope 10.91% (6/55) 2.42 0.00088 0.012836
GO:0009064 glutamine family amino acid metabolic process 5.45% (3/55) 3.99 0.000907 0.013003
GO:0015556 C4-dicarboxylate transmembrane transporter activity 3.64% (2/55) 5.43 0.000998 0.013367
GO:0034284 response to monosaccharide 7.27% (4/55) 3.13 0.001133 0.01493
GO:0030656 regulation of vitamin metabolic process 3.64% (2/55) 5.3 0.001188 0.015402
GO:0015172 acidic amino acid transmembrane transporter activity 3.64% (2/55) 5.26 0.001254 0.015767
GO:0098807 chloroplast thylakoid membrane protein complex 3.64% (2/55) 5.26 0.001254 0.015767
GO:0006541 glutamine metabolic process 3.64% (2/55) 5.23 0.001323 0.016376
GO:0102978 furaneol oxidoreductase activity 1.82% (1/55) 9.47 0.001407 0.016906
GO:1901403 positive regulation of tetrapyrrole metabolic process 3.64% (2/55) 5.19 0.001393 0.016988
GO:0071398 cellular response to fatty acid 3.64% (2/55) 5.08 0.001614 0.019115
GO:0005310 dicarboxylic acid transmembrane transporter activity 3.64% (2/55) 4.98 0.001851 0.021006
GO:0006094 gluconeogenesis 3.64% (2/55) 4.98 0.001851 0.021006
GO:0019203 carbohydrate phosphatase activity 3.64% (2/55) 4.98 0.001851 0.021006
GO:0006536 glutamate metabolic process 3.64% (2/55) 4.92 0.002018 0.022582
GO:0015740 C4-dicarboxylate transport 3.64% (2/55) 4.89 0.002104 0.023225
GO:0019318 hexose metabolic process 5.45% (3/55) 3.5 0.002426 0.026431
GO:0019747 regulation of isoprenoid metabolic process 5.45% (3/55) 3.48 0.0025 0.026872
GO:0019319 hexose biosynthetic process 3.64% (2/55) 4.69 0.002752 0.029199
GO:0005622 intracellular anatomical structure 9.09% (5/55) 2.35 0.002964 0.030652
GO:0051938 L-glutamate import 3.64% (2/55) 4.62 0.003055 0.030814
GO:1902932 positive regulation of alcohol biosynthetic process 3.64% (2/55) 4.62 0.003055 0.030814
GO:0015813 L-glutamate transmembrane transport 3.64% (2/55) 4.64 0.002952 0.030924
GO:0031090 organelle membrane 27.27% (15/55) 1.09 0.003179 0.031675
GO:0015800 acidic amino acid transport 3.64% (2/55) 4.57 0.003265 0.032142
GO:0046351 disaccharide biosynthetic process 3.64% (2/55) 4.54 0.003373 0.032807
GO:0010319 stromule 3.64% (2/55) 4.52 0.003482 0.033082
GO:0009644 response to high light intensity 5.45% (3/55) 3.32 0.003443 0.03309
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor 3.64% (2/55) 4.47 0.003706 0.034801
GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation 1.82% (1/55) 7.89 0.004215 0.038697
GO:0010240 plastid pyruvate dehydrogenase complex 1.82% (1/55) 7.89 0.004215 0.038697
GO:0009753 response to jasmonic acid 9.09% (5/55) 2.2 0.00462 0.041942
GO:1901804 beta-glucoside metabolic process 3.64% (2/55) 4.26 0.004921 0.043697
GO:0046906 tetrapyrrole binding 7.27% (4/55) 2.55 0.004881 0.043825
GO:0005996 monosaccharide metabolic process 5.45% (3/55) 3.05 0.005728 0.047757
GO:0015035 protein-disulfide reductase activity 3.64% (2/55) 4.15 0.005726 0.048227
GO:0031977 thylakoid lumen 3.64% (2/55) 4.15 0.005726 0.048227
GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex 1.82% (1/55) 7.47 0.005617 0.048303
GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity 1.82% (1/55) 7.47 0.005617 0.048303
GO:0045828 positive regulation of isoprenoid metabolic process 3.64% (2/55) 4.13 0.005866 0.048406
GO:0009312 oligosaccharide biosynthetic process 3.64% (2/55) 4.12 0.006007 0.049076
GO:0035252 UDP-xylosyltransferase activity 3.64% (2/55) 4.17 0.005588 0.049088
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.022 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_95 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_152 0.012 Orthogroups with 8 Potato genotypes Compare
Sequences (55) (download table)

InterPro Domains

GO Terms

Family Terms