Coexpression cluster: Cluster_234 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0110127 phloem unloading 6.38% (3/47) 8.11 0.0 8.3e-05
GO:0110128 phloem sucrose unloading 6.38% (3/47) 8.11 0.0 8.3e-05
GO:0070588 calcium ion transmembrane transport 8.51% (4/47) 4.85 1.1e-05 0.004657
GO:0015772 oligosaccharide transport 6.38% (3/47) 5.26 6.8e-05 0.006838
GO:0009651 response to salt stress 21.28% (10/47) 2.16 6e-05 0.007236
GO:0005509 calcium ion binding 10.64% (5/47) 3.55 6.6e-05 0.007343
GO:0006970 response to osmotic stress 23.4% (11/47) 2.02 5.9e-05 0.007899
GO:0015766 disaccharide transport 6.38% (3/47) 5.35 5.6e-05 0.00848
GO:0005544 calcium-dependent phospholipid binding 4.26% (2/47) 7.11 9.3e-05 0.008662
GO:0035619 root hair tip 6.38% (3/47) 5.38 5.3e-05 0.009222
GO:0098660 inorganic ion transmembrane transport 12.77% (6/47) 2.97 0.000111 0.009663
GO:0015770 sucrose transport 6.38% (3/47) 5.43 4.8e-05 0.009718
GO:0001676 long-chain fatty acid metabolic process 6.38% (3/47) 4.93 0.000135 0.010933
GO:0006816 calcium ion transport 8.51% (4/47) 4.34 4.6e-05 0.011248
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 8.51% (4/47) 3.89 0.000157 0.011923
GO:0065007 biological regulation 65.96% (31/47) 0.85 4.4e-05 0.013309
GO:0051707 response to other organism 36.17% (17/47) 1.27 0.000277 0.01977
GO:0098662 inorganic cation transmembrane transport 10.64% (5/47) 3.09 0.000293 0.019787
GO:0044419 biological process involved in interspecies interaction between organisms 36.17% (17/47) 1.23 0.000391 0.023729
GO:0070382 exocytic vesicle 6.38% (3/47) 4.41 0.000385 0.024618
GO:0050794 regulation of cellular process 53.19% (25/47) 0.87 0.000476 0.027563
GO:0070206 protein trimerization 4.26% (2/47) 5.75 0.000644 0.027925
GO:0015211 purine nucleoside transmembrane transporter activity 4.26% (2/47) 5.75 0.000644 0.027925
GO:0001786 phosphatidylserine binding 4.26% (2/47) 5.89 0.000524 0.028958
GO:0010233 phloem transport 6.38% (3/47) 4.17 0.000636 0.029735
GO:0005539 glycosaminoglycan binding 4.26% (2/47) 5.79 0.000602 0.0305
GO:0045487 gibberellin catabolic process 4.26% (2/47) 5.66 0.00073 0.030568
GO:0098655 cation transmembrane transport 10.64% (5/47) 2.88 0.000581 0.030687
GO:0043207 response to external biotic stimulus 36.17% (17/47) 1.17 0.000632 0.030718
GO:0009607 response to biotic stimulus 36.17% (17/47) 1.15 0.00077 0.031175
GO:0010033 response to organic substance 38.3% (18/47) 1.07 0.000943 0.03183
GO:0006076 (1->3)-beta-D-glucan catabolic process 4.26% (2/47) 5.53 0.000869 0.031979
GO:0006952 defense response 31.91% (15/47) 1.24 0.000932 0.032371
GO:0005337 nucleoside transmembrane transporter activity 4.26% (2/47) 5.49 0.000917 0.032787
GO:0031226 intrinsic component of plasma membrane 10.64% (5/47) 2.75 0.000868 0.032962
GO:0034220 ion transmembrane transport 12.77% (6/47) 2.37 0.001026 0.033687
GO:0031224 intrinsic component of membrane 25.53% (12/47) 1.48 0.000866 0.033929
GO:0042759 long-chain fatty acid biosynthetic process 4.26% (2/47) 5.38 0.001072 0.034278
GO:0016103 diterpenoid catabolic process 4.26% (2/47) 5.27 0.001238 0.035821
GO:0030001 metal ion transport 10.64% (5/47) 2.64 0.001226 0.036325
GO:0061090 positive regulation of sequestering of zinc ion 2.13% (1/47) 9.7 0.001202 0.036523
GO:0093002 response to nematicide 2.13% (1/47) 9.7 0.001202 0.036523
GO:0006074 (1->3)-beta-D-glucan metabolic process 4.26% (2/47) 5.21 0.001355 0.038301
GO:0009408 response to heat 12.77% (6/47) 2.27 0.001466 0.039578
GO:0009914 hormone transport 8.51% (4/47) 3.02 0.001503 0.039712
GO:0010184 cytokinin transport 4.26% (2/47) 5.11 0.001541 0.039834
GO:0098542 defense response to other organism 27.66% (13/47) 1.31 0.001446 0.039934
GO:0032879 regulation of localization 17.02% (8/47) 1.83 0.001625 0.0403
GO:0010232 vascular transport 6.38% (3/47) 3.7 0.001614 0.040846
GO:0050789 regulation of biological process 55.32% (26/47) 0.72 0.001745 0.041579
GO:0010817 regulation of hormone levels 14.89% (7/47) 1.99 0.001727 0.041963
GO:0051275 beta-glucan catabolic process 4.26% (2/47) 4.97 0.001875 0.042989
GO:0042221 response to chemical 44.68% (21/47) 0.87 0.00186 0.043451
GO:0015851 nucleobase transport 4.26% (2/47) 4.82 0.002318 0.044699
GO:0003018 vascular process in circulatory system 6.38% (3/47) 3.58 0.002027 0.044773
GO:0050819 negative regulation of coagulation 2.13% (1/47) 8.7 0.002403 0.044925
GO:0065008 regulation of biological quality 27.66% (13/47) 1.26 0.002006 0.045144
GO:0032501 multicellular organismal process 36.17% (17/47) 1.01 0.002383 0.045235
GO:1901700 response to oxygen-containing compound 34.04% (16/47) 1.06 0.002312 0.045299
GO:0005345 purine nucleobase transmembrane transporter activity 4.26% (2/47) 4.89 0.002091 0.045365
GO:0004601 peroxidase activity 6.38% (3/47) 3.52 0.002285 0.045522
GO:0030133 transport vesicle 6.38% (3/47) 3.53 0.002256 0.045679
GO:0006863 purine nucleobase transport 4.26% (2/47) 4.84 0.002241 0.046147
GO:0015205 nucleobase transmembrane transporter activity 4.26% (2/47) 4.87 0.002165 0.046154
GO:0008643 carbohydrate transport 6.38% (3/47) 3.54 0.002226 0.046637
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_247 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_28 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_105 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_129 0.016 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_202 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (47) (download table)

InterPro Domains

GO Terms

Family Terms