Coexpression cluster: Cluster_42 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009505 plant-type cell wall 36.0% (45/125) 3.98 0.0 0.0
GO:0030312 external encapsulating structure 44.0% (55/125) 3.15 0.0 0.0
GO:0005618 cell wall 42.4% (53/125) 3.18 0.0 0.0
GO:0005576 extracellular region 33.6% (42/125) 2.86 0.0 0.0
GO:0004601 peroxidase activity 16.0% (20/125) 4.85 0.0 0.0
GO:0016684 oxidoreductase activity, acting on peroxide as acceptor 16.0% (20/125) 4.8 0.0 0.0
GO:0045730 respiratory burst 12.0% (15/125) 5.89 0.0 0.0
GO:0009269 response to desiccation 12.8% (16/125) 5.43 0.0 0.0
GO:0016209 antioxidant activity 16.0% (20/125) 4.57 0.0 0.0
GO:0009664 plant-type cell wall organization 18.4% (23/125) 3.86 0.0 0.0
GO:0071669 plant-type cell wall organization or biogenesis 21.6% (27/125) 3.38 0.0 0.0
GO:0071554 cell wall organization or biogenesis 26.4% (33/125) 2.81 0.0 0.0
GO:0071555 cell wall organization 23.2% (29/125) 3.07 0.0 0.0
GO:0048046 apoplast 20.8% (26/125) 3.07 0.0 0.0
GO:0042538 hyperosmotic salinity response 13.6% (17/125) 4.1 0.0 0.0
GO:0045229 external encapsulating structure organization 23.2% (29/125) 2.72 0.0 0.0
GO:0006972 hyperosmotic response 13.6% (17/125) 3.71 0.0 0.0
GO:0009808 lignin metabolic process 12.8% (16/125) 3.87 0.0 0.0
GO:0010030 positive regulation of seed germination 8.0% (10/125) 4.57 0.0 0.0
GO:0005911 cell-cell junction 28.0% (35/125) 1.81 0.0 0.0
GO:0070161 anchoring junction 28.0% (35/125) 1.79 0.0 0.0
GO:0009506 plasmodesma 27.2% (34/125) 1.8 0.0 0.0
GO:0030054 cell junction 28.8% (36/125) 1.64 0.0 0.0
GO:0009698 phenylpropanoid metabolic process 16.0% (20/125) 2.5 0.0 0.0
GO:0046910 pectinesterase inhibitor activity 5.6% (7/125) 5.03 0.0 0.0
GO:0009415 response to water 19.2% (24/125) 2.02 0.0 0.0
GO:0009409 response to cold 18.4% (23/125) 2.07 0.0 0.0
GO:0009620 response to fungus 20.8% (26/125) 1.86 0.0 0.0
GO:0009414 response to water deprivation 18.4% (23/125) 2.01 0.0 0.0
GO:0001101 response to acid chemical 19.2% (24/125) 1.93 0.0 1e-06
GO:0019748 secondary metabolic process 18.4% (23/125) 1.92 0.0 1e-06
GO:0030599 pectinesterase activity 4.8% (6/125) 4.77 0.0 3e-06
GO:0050832 defense response to fungus 15.2% (19/125) 2.05 0.0 6e-06
GO:0016762 xyloglucan:xyloglucosyl transferase activity 4.0% (5/125) 5.29 0.0 6e-06
GO:0048658 anther wall tapetum development 5.6% (7/125) 4.06 0.0 7e-06
GO:2000028 regulation of photoperiodism, flowering 8.0% (10/125) 3.11 0.0 9e-06
GO:0009266 response to temperature stimulus 20.0% (25/125) 1.64 0.0 1.1e-05
GO:0042545 cell wall modification 9.6% (12/125) 2.67 0.0 1.4e-05
GO:0010029 regulation of seed germination 8.8% (11/125) 2.79 1e-06 1.9e-05
GO:0071456 cellular response to hypoxia 7.2% (9/125) 3.07 1e-06 4.1e-05
GO:1900140 regulation of seedling development 8.8% (11/125) 2.65 2e-06 4.4e-05
GO:0036294 cellular response to decreased oxygen levels 7.2% (9/125) 3.03 2e-06 4.8e-05
GO:0009651 response to salt stress 16.0% (20/125) 1.75 2e-06 4.9e-05
GO:0016491 oxidoreductase activity 19.2% (24/125) 1.52 3e-06 6.5e-05
GO:0071453 cellular response to oxygen levels 7.2% (9/125) 2.91 4e-06 9e-05
GO:0005794 Golgi apparatus 13.6% (17/125) 1.87 4e-06 9.9e-05
GO:0048582 positive regulation of post-embryonic development 8.0% (10/125) 2.68 4e-06 0.0001
GO:0098542 defense response to other organism 25.6% (32/125) 1.2 5e-06 0.000113
GO:0009605 response to external stimulus 36.8% (46/125) 0.88 9e-06 0.000202
GO:0010411 xyloglucan metabolic process 4.0% (5/125) 4.17 9e-06 0.000207
GO:0009834 plant-type secondary cell wall biogenesis 5.6% (7/125) 3.26 1e-05 0.000211
GO:0048235 pollen sperm cell differentiation 4.8% (6/125) 3.52 1.5e-05 0.000322
GO:0009832 plant-type cell wall biogenesis 6.4% (8/125) 2.8 2.2e-05 0.000467
GO:0030445 yeast-form cell wall 2.4% (3/125) 5.63 3e-05 0.000619
GO:0006970 response to osmotic stress 16.0% (20/125) 1.47 3.2e-05 0.000661
GO:0007623 circadian rhythm 8.0% (10/125) 2.32 3.5e-05 0.000696
GO:0042221 response to chemical 40.8% (51/125) 0.74 3.8e-05 0.000727
GO:0005976 polysaccharide metabolic process 9.6% (12/125) 2.05 3.7e-05 0.000729
GO:0020037 heme binding 6.4% (8/125) 2.62 5.2e-05 0.000981
GO:0051707 response to other organism 28.8% (36/125) 0.94 5.5e-05 0.001026
GO:1901700 response to oxygen-containing compound 30.4% (38/125) 0.9 6.6e-05 0.00121
GO:0050896 response to stimulus 56.0% (70/125) 0.53 6.7e-05 0.001214
GO:0048511 rhythmic process 8.0% (10/125) 2.19 7.6e-05 0.001358
GO:0009277 fungal-type cell wall 2.4% (3/125) 5.17 7.9e-05 0.001378
GO:0006952 defense response 26.4% (33/125) 0.97 9.3e-05 0.001607
GO:0043207 response to external biotic stimulus 29.6% (37/125) 0.89 0.000101 0.001692
GO:0044419 biological process involved in interspecies interaction between organisms 28.8% (36/125) 0.9 0.0001 0.001695
GO:0042546 cell wall biogenesis 6.4% (8/125) 2.47 0.00011 0.001793
GO:0010266 response to vitamin B1 2.4% (3/125) 5.02 0.00011 0.00181
GO:0010410 hemicellulose metabolic process 4.8% (6/125) 3.0 0.000114 0.001833
GO:0050829 defense response to Gram-negative bacterium 4.8% (6/125) 2.99 0.000117 0.00185
GO:0001666 response to hypoxia 7.2% (9/125) 2.25 0.000124 0.001932
GO:0009607 response to biotic stimulus 29.6% (37/125) 0.86 0.000144 0.002179
GO:0071365 cellular response to auxin stimulus 4.0% (5/125) 3.34 0.000143 0.00219
GO:0009612 response to mechanical stimulus 4.0% (5/125) 3.3 0.000166 0.002474
GO:0046906 tetrapyrrole binding 6.4% (8/125) 2.36 0.000178 0.002595
GO:0010035 response to inorganic substance 20.8% (26/125) 1.08 0.000181 0.002606
GO:0015485 cholesterol binding 2.4% (3/125) 4.79 0.000178 0.002621
GO:0006950 response to stress 43.2% (54/125) 0.63 0.00019 0.00269
GO:0036293 response to decreased oxygen levels 7.2% (9/125) 2.17 0.000195 0.002734
GO:0009628 response to abiotic stimulus 32.8% (41/125) 0.78 0.000203 0.002811
GO:0016413 O-acetyltransferase activity 4.0% (5/125) 3.23 0.000208 0.002843
GO:0004857 enzyme inhibitor activity 5.6% (7/125) 2.53 0.000232 0.003131
GO:0002215 defense response to nematode 3.2% (4/125) 3.73 0.000243 0.003247
GO:0070482 response to oxygen levels 7.2% (9/125) 2.09 0.000291 0.00379
GO:0032934 sterol binding 2.4% (3/125) 4.55 0.000289 0.003815
GO:0010218 response to far red light 4.0% (5/125) 3.06 0.00035 0.004513
GO:0051722 protein C-terminal methylesterase activity 1.6% (2/125) 6.12 0.00036 0.004585
GO:0016407 acetyltransferase activity 4.8% (6/125) 2.65 0.00041 0.005164
GO:0008374 O-acyltransferase activity 4.8% (6/125) 2.64 0.000425 0.00529
GO:0009791 post-embryonic development 13.6% (17/125) 1.32 0.000439 0.005402
GO:0044036 cell wall macromolecule metabolic process 5.6% (7/125) 2.36 0.000454 0.005529
GO:0052689 carboxylic ester hydrolase activity 5.6% (7/125) 2.36 0.00046 0.005546
GO:0071840 cellular component organization or biogenesis 29.6% (37/125) 0.77 0.000532 0.006348
GO:0051723 protein methylesterase activity 1.6% (2/125) 5.83 0.000548 0.006461
GO:0005496 steroid binding 2.4% (3/125) 4.2 0.000594 0.00694
GO:0080022 primary root development 4.0% (5/125) 2.88 0.00062 0.007161
GO:0003824 catalytic activity 47.2% (59/125) 0.52 0.000674 0.007712
GO:0000272 polysaccharide catabolic process 4.8% (6/125) 2.51 0.000699 0.00792
GO:0010383 cell wall polysaccharide metabolic process 4.8% (6/125) 2.5 0.000722 0.008091
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 5.6% (7/125) 2.25 0.000732 0.008129
GO:0045490 pectin catabolic process 3.2% (4/125) 3.2 0.000981 0.010783
GO:0016043 cellular component organization 27.2% (34/125) 0.74 0.00143 0.015566
GO:0015908 fatty acid transport 2.4% (3/125) 3.66 0.001754 0.018373
GO:0009639 response to red or far red light 6.4% (8/125) 1.86 0.001747 0.018472
GO:0005975 carbohydrate metabolic process 10.4% (13/125) 1.36 0.001733 0.018506
GO:0009733 response to auxin 8.0% (10/125) 1.61 0.001729 0.018641
GO:0044085 cellular component biogenesis 6.4% (8/125) 1.84 0.001893 0.01947
GO:0016798 hydrolase activity, acting on glycosyl bonds 6.4% (8/125) 1.84 0.001876 0.019476
GO:0009270 response to humidity 1.6% (2/125) 4.9 0.002047 0.020864
GO:0110165 cellular anatomical entity 72.8% (91/125) 0.27 0.002142 0.02163
GO:0015918 sterol transport 2.4% (3/125) 3.55 0.002192 0.021939
GO:0051240 positive regulation of multicellular organismal process 8.0% (10/125) 1.54 0.002394 0.023747
GO:0005615 extracellular space 4.8% (6/125) 2.14 0.002554 0.025116
GO:0009986 cell surface 3.2% (4/125) 2.81 0.002626 0.025594
GO:0043178 alcohol binding 2.4% (3/125) 3.41 0.002874 0.027773
GO:0009725 response to hormone 20.0% (25/125) 0.83 0.002925 0.028026
GO:0033273 response to vitamin 2.4% (3/125) 3.4 0.002967 0.028189
GO:0008150 biological_process 73.6% (92/125) 0.26 0.003036 0.028602
GO:0019226 transmission of nerve impulse 0.8% (1/125) 8.29 0.003198 0.029627
GO:0032290 peripheral nervous system myelin formation 0.8% (1/125) 8.29 0.003198 0.029627
GO:0048580 regulation of post-embryonic development 10.4% (13/125) 1.25 0.003239 0.029758
GO:0046527 glucosyltransferase activity 4.8% (6/125) 2.06 0.003343 0.030466
GO:0045330 aspartyl esterase activity 1.6% (2/125) 4.53 0.003379 0.03055
GO:0005575 cellular_component 72.8% (91/125) 0.25 0.003865 0.034658
GO:0047911 galacturan 1,4-alpha-galacturonidase activity 1.6% (2/125) 4.38 0.004162 0.037028
GO:0043667 pollen wall 1.6% (2/125) 4.24 0.00502 0.044312
GO:1903561 extracellular vesicle 2.4% (3/125) 3.11 0.005237 0.045868
GO:0043230 extracellular organelle 2.4% (3/125) 3.09 0.005372 0.046322
GO:0065010 extracellular membrane-bounded organelle 2.4% (3/125) 3.09 0.005372 0.046322
GO:0009627 systemic acquired resistance 3.2% (4/125) 2.5 0.005656 0.048398
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_86 0.017 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_135 0.028 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_174 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_228 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_253 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_266 0.014 Orthogroups with 8 Potato genotypes Compare
Sequences (125) (download table)

InterPro Domains

GO Terms

Family Terms