Coexpression cluster: Cluster_62 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016553 base conversion or substitution editing 7.41% (8/108) 4.12 0.0 1.6e-05
GO:1900865 chloroplast RNA modification 7.41% (8/108) 4.02 0.0 1.8e-05
GO:0016554 cytidine to uridine editing 7.41% (8/108) 4.2 0.0 2.1e-05
GO:0016556 mRNA modification 8.33% (9/108) 3.55 0.0 3.1e-05
GO:0080156 mitochondrial mRNA modification 7.41% (8/108) 3.8 0.0 3.5e-05
GO:0031425 chloroplast RNA processing 6.48% (7/108) 3.86 1e-06 0.000122
GO:0016071 mRNA metabolic process 12.96% (14/108) 2.37 1e-06 0.000128
GO:1900864 mitochondrial RNA modification 7.41% (8/108) 3.35 1e-06 0.000231
GO:0000959 mitochondrial RNA metabolic process 8.33% (9/108) 3.03 2e-06 0.00028
GO:0140547 acquisition of seed longevity 4.63% (5/108) 4.3 6e-06 0.000833
GO:0006396 RNA processing 13.89% (15/108) 1.68 6.5e-05 0.006451
GO:0009507 chloroplast 13.89% (15/108) 1.69 6.4e-05 0.006856
GO:0009536 plastid 16.67% (18/108) 1.5 6e-05 0.007021
GO:0009451 RNA modification 8.33% (9/108) 2.4 5.5e-05 0.007044
GO:0010467 gene expression 5.56% (6/108) 3.07 8.7e-05 0.008098
GO:0004518 nuclease activity 6.48% (7/108) 2.68 0.00012 0.010521
GO:0016070 RNA metabolic process 15.74% (17/108) 1.4 0.000224 0.018404
GO:0006571 tyrosine biosynthetic process 1.85% (2/108) 6.33 0.000269 0.020882
GO:0000963 mitochondrial RNA processing 4.63% (5/108) 3.13 0.000284 0.020916
GO:0140053 mitochondrial gene expression 4.63% (5/108) 3.0 0.000425 0.029697
GO:0090304 nucleic acid metabolic process 18.52% (20/108) 1.17 0.000494 0.032882
GO:0003723 RNA binding 15.74% (17/108) 1.28 0.000595 0.037801
GO:0003729 mRNA binding 12.04% (13/108) 1.49 0.000713 0.039887
GO:0004519 endonuclease activity 4.63% (5/108) 2.84 0.000708 0.041225
GO:0033612 receptor serine/threonine kinase binding 3.7% (4/108) 3.34 0.000685 0.041659
GO:0010588 cotyledon vascular tissue pattern formation 3.7% (4/108) 3.27 0.000819 0.044049
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_176 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_181 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_223 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_319 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_329 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_35 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (108) (download table)

InterPro Domains

GO Terms

Family Terms