Coexpression cluster: Cluster_56 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032454 histone H3-methyl-lysine-9 demethylase activity 4.55% (3/66) 6.15 1e-05 0.018741
GO:0099174 regulation of presynapse organization 3.03% (2/66) 7.21 7.8e-05 0.023693
GO:0019784 deNEDDylase activity 3.03% (2/66) 7.04 0.0001 0.026082
GO:0010231 maintenance of seed dormancy 4.55% (3/66) 4.86 0.000154 0.028079
GO:0097437 maintenance of dormancy 4.55% (3/66) 4.86 0.000154 0.028079
GO:0048523 negative regulation of cellular process 28.79% (19/66) 1.36 7.8e-05 0.028231
GO:0060969 obsolete negative regulation of gene silencing 3.03% (2/66) 6.89 0.000125 0.028496
GO:0032452 histone demethylase activity 4.55% (3/66) 5.24 7.1e-05 0.032165
GO:0140457 protein demethylase activity 4.55% (3/66) 5.24 7.1e-05 0.032165
GO:0032451 demethylase activity 4.55% (3/66) 4.69 0.000222 0.036804
GO:0036211 protein modification process 25.76% (17/66) 1.34 0.000248 0.037643
GO:0016570 histone modification 9.09% (6/66) 2.71 0.000317 0.04118
GO:0140535 intracellular protein-containing complex 12.12% (8/66) 2.22 0.000305 0.042683
GO:0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0033183 negative regulation of histone ubiquitination 1.52% (1/66) 9.21 0.001688 0.044537
GO:0061815 Met1-linked polyubiquitin deubiquitinase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:1900045 negative regulation of protein K63-linked ubiquitination 1.52% (1/66) 9.21 0.001688 0.044537
GO:1901314 regulation of histone H2A K63-linked ubiquitination 1.52% (1/66) 9.21 0.001688 0.044537
GO:1901315 negative regulation of histone H2A K63-linked ubiquitination 1.52% (1/66) 9.21 0.001688 0.044537
GO:0032942 inositol tetrakisphosphate 2-kinase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0035299 inositol pentakisphosphate 2-kinase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0019705 protein-cysteine S-myristoyltransferase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0030160 synaptic receptor adaptor activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0042665 regulation of ectodermal cell fate specification 1.52% (1/66) 9.21 0.001688 0.044537
GO:0042953 lipoprotein transport 1.52% (1/66) 9.21 0.001688 0.044537
GO:0044872 lipoprotein localization 1.52% (1/66) 9.21 0.001688 0.044537
GO:0051386 regulation of neurotrophin TRK receptor signaling pathway 1.52% (1/66) 9.21 0.001688 0.044537
GO:0060803 BMP signaling pathway involved in mesodermal cell fate specification 1.52% (1/66) 9.21 0.001688 0.044537
GO:0140439 protein-cysteine S-stearoyltransferase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0010919 regulation of inositol phosphate biosynthetic process 1.52% (1/66) 9.21 0.001688 0.044537
GO:0032960 regulation of inositol trisphosphate biosynthetic process 1.52% (1/66) 9.21 0.001688 0.044537
GO:0009047 dosage compensation by hyperactivation of X chromosome 1.52% (1/66) 9.21 0.001688 0.044537
GO:0016456 X chromosome located dosage compensation complex, transcription activating 1.52% (1/66) 9.21 0.001688 0.044537
GO:0043995 histone acetyltransferase activity (H4-K5 specific) 1.52% (1/66) 9.21 0.001688 0.044537
GO:0043996 histone acetyltransferase activity (H4-K8 specific) 1.52% (1/66) 9.21 0.001688 0.044537
GO:0046536 dosage compensation complex 1.52% (1/66) 9.21 0.001688 0.044537
GO:0046972 histone acetyltransferase activity (H4-K16 specific) 1.52% (1/66) 9.21 0.001688 0.044537
GO:0072720 response to dithiothreitol 1.52% (1/66) 9.21 0.001688 0.044537
GO:0072739 response to anisomycin 1.52% (1/66) 9.21 0.001688 0.044537
GO:1902033 regulation of hematopoietic stem cell proliferation 1.52% (1/66) 9.21 0.001688 0.044537
GO:1902035 positive regulation of hematopoietic stem cell proliferation 1.52% (1/66) 9.21 0.001688 0.044537
GO:2000873 regulation of histone H4 acetylation involved in response to DNA damage stimulus 1.52% (1/66) 9.21 0.001688 0.044537
GO:0008768 UDP-sugar diphosphatase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0052751 GDP-mannose hydrolase activity 1.52% (1/66) 9.21 0.001688 0.044537
GO:0071242 cellular response to ammonium ion 1.52% (1/66) 9.21 0.001688 0.044537
GO:0042995 cell projection 13.64% (9/66) 2.0 0.000394 0.047746
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_70 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_74 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_77 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_111 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_202 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_215 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_261 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (66) (download table)

InterPro Domains

GO Terms

Family Terms