Coexpression cluster: Cluster_34 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0016556 mRNA modification 47.42% (46/97) 6.05 0.0 0.0
GO:0080156 mitochondrial mRNA modification 41.24% (40/97) 6.28 0.0 0.0
GO:0000959 mitochondrial RNA metabolic process 47.42% (46/97) 5.53 0.0 0.0
GO:0016071 mRNA metabolic process 57.73% (56/97) 4.53 0.0 0.0
GO:0009451 RNA modification 51.55% (50/97) 5.03 0.0 0.0
GO:0031425 chloroplast RNA processing 38.14% (37/97) 6.41 0.0 0.0
GO:0016070 RNA metabolic process 70.1% (68/97) 3.55 0.0 0.0
GO:1900864 mitochondrial RNA modification 41.24% (40/97) 5.83 0.0 0.0
GO:1900865 chloroplast RNA modification 34.02% (33/97) 6.22 0.0 0.0
GO:0090304 nucleic acid metabolic process 71.13% (69/97) 3.11 0.0 0.0
GO:0006396 RNA processing 58.76% (57/97) 3.76 0.0 0.0
GO:0016554 cytidine to uridine editing 30.93% (30/97) 6.26 0.0 0.0
GO:0016553 base conversion or substitution editing 30.93% (30/97) 6.18 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 72.16% (70/97) 2.84 0.0 0.0
GO:0046483 heterocycle metabolic process 74.23% (72/97) 2.49 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 74.23% (72/97) 2.44 0.0 0.0
GO:0003723 RNA binding 57.73% (56/97) 3.15 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 74.23% (72/97) 2.3 0.0 0.0
GO:0009536 plastid 53.61% (52/97) 3.18 0.0 0.0
GO:0009507 chloroplast 48.45% (47/97) 3.49 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 74.23% (72/97) 2.17 0.0 0.0
GO:0140547 acquisition of seed longevity 21.65% (21/97) 6.52 0.0 0.0
GO:0003729 mRNA binding 46.39% (45/97) 3.44 0.0 0.0
GO:0004519 endonuclease activity 25.77% (25/97) 5.32 0.0 0.0
GO:0004518 nuclease activity 26.8% (26/97) 4.73 0.0 0.0
GO:0043170 macromolecule metabolic process 76.29% (74/97) 1.77 0.0 0.0
GO:0010051 xylem and phloem pattern formation 26.8% (26/97) 4.47 0.0 0.0
GO:0003676 nucleic acid binding 62.89% (61/97) 2.11 0.0 0.0
GO:0005739 mitochondrion 41.24% (40/97) 3.01 0.0 0.0
GO:0010588 cotyledon vascular tissue pattern formation 18.56% (18/97) 5.6 0.0 0.0
GO:0010214 seed coat development 21.65% (21/97) 4.92 0.0 0.0
GO:0010305 leaf vascular tissue pattern formation 18.56% (18/97) 5.31 0.0 0.0
GO:0006807 nitrogen compound metabolic process 77.32% (75/97) 1.47 0.0 0.0
GO:0043412 macromolecule modification 52.58% (51/97) 2.13 0.0 0.0
GO:0044238 primary metabolic process 79.38% (77/97) 1.32 0.0 0.0
GO:0003002 regionalization 27.84% (27/97) 3.54 0.0 0.0
GO:0010467 gene expression 18.56% (18/97) 4.81 0.0 0.0
GO:0140053 mitochondrial gene expression 17.53% (17/97) 4.92 0.0 0.0
GO:1901363 heterocyclic compound binding 67.01% (65/97) 1.44 0.0 0.0
GO:0044237 cellular metabolic process 77.32% (75/97) 1.19 0.0 0.0
GO:0071704 organic substance metabolic process 80.41% (78/97) 1.12 0.0 0.0
GO:0097159 organic cyclic compound binding 67.01% (65/97) 1.43 0.0 0.0
GO:0000963 mitochondrial RNA processing 15.46% (15/97) 4.87 0.0 0.0
GO:0007389 pattern specification process 27.84% (27/97) 3.07 0.0 0.0
GO:0008152 metabolic process 80.41% (78/97) 1.02 0.0 0.0
GO:0016788 hydrolase activity, acting on ester bonds 27.84% (27/97) 2.82 0.0 0.0
GO:0031426 polycistronic mRNA processing 9.28% (9/97) 6.5 0.0 0.0
GO:0009756 carbohydrate mediated signaling 12.37% (12/97) 4.64 0.0 0.0
GO:0010182 sugar mediated signaling pathway 12.37% (12/97) 4.64 0.0 0.0
GO:0010087 phloem or xylem histogenesis 18.56% (18/97) 3.4 0.0 0.0
GO:0043227 membrane-bounded organelle 72.16% (70/97) 1.03 0.0 0.0
GO:0006397 mRNA processing 16.49% (16/97) 3.6 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 71.13% (69/97) 1.03 0.0 0.0
GO:0009987 cellular process 86.6% (84/97) 0.73 0.0 0.0
GO:0032501 multicellular organismal process 49.48% (48/97) 1.46 0.0 0.0
GO:0043229 intracellular organelle 74.23% (72/97) 0.89 0.0 0.0
GO:0043226 organelle 74.23% (72/97) 0.89 0.0 0.0
GO:0008150 biological_process 91.75% (89/97) 0.58 0.0 0.0
GO:0005488 binding 82.47% (80/97) 0.72 0.0 0.0
GO:0016787 hydrolase activity 32.99% (32/97) 1.69 0.0 0.0
GO:0008270 zinc ion binding 14.43% (14/97) 2.95 0.0 0.0
GO:0009888 tissue development 18.56% (18/97) 2.38 0.0 0.0
GO:0048856 anatomical structure development 45.36% (44/97) 1.19 0.0 0.0
GO:0005575 cellular_component 86.6% (84/97) 0.5 0.0 0.0
GO:0003674 molecular_function 85.57% (83/97) 0.52 0.0 0.0
GO:0022414 reproductive process 41.24% (40/97) 1.23 0.0 1e-06
GO:0110165 cellular anatomical entity 84.54% (82/97) 0.49 0.0 2e-06
GO:0032502 developmental process 50.52% (49/97) 0.9 1e-06 1e-05
GO:0009240 isopentenyl diphosphate biosynthetic process 4.12% (4/97) 5.1 6e-06 7.8e-05
GO:0046490 isopentenyl diphosphate metabolic process 4.12% (4/97) 5.1 6e-06 7.8e-05
GO:0003006 developmental process involved in reproduction 31.96% (31/97) 1.17 7e-06 8.9e-05
GO:0009657 plastid organization 9.28% (9/97) 2.68 1.2e-05 0.000158
GO:0046914 transition metal ion binding 14.43% (14/97) 1.87 2.7e-05 0.000339
GO:0009658 chloroplast organization 8.25% (8/97) 2.69 3.6e-05 0.000447
GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway 3.09% (3/97) 5.48 4.1e-05 0.000506
GO:0048366 leaf development 8.25% (8/97) 2.66 4.1e-05 0.000507
GO:0019682 glyceraldehyde-3-phosphate metabolic process 3.09% (3/97) 5.24 7e-05 0.00084
GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway 3.09% (3/97) 5.2 7.7e-05 0.00091
GO:1904821 chloroplast disassembly 2.06% (2/97) 7.07 9.1e-05 0.001066
GO:0034046 poly(G) binding 3.09% (3/97) 4.81 0.00017 0.001971
GO:0046872 metal ion binding 23.71% (23/97) 1.13 0.000218 0.00249
GO:0043169 cation binding 23.71% (23/97) 1.1 0.000304 0.003438
GO:0010343 singlet oxygen-mediated programmed cell death 2.06% (2/97) 6.2 0.00033 0.00369
GO:0006090 pyruvate metabolic process 4.12% (4/97) 3.45 0.00052 0.005742
GO:0048827 phyllome development 8.25% (8/97) 2.12 0.000541 0.005905
GO:0090615 mitochondrial mRNA processing 3.09% (3/97) 4.13 0.000689 0.007429
GO:0006637 acyl-CoA metabolic process 4.12% (4/97) 3.14 0.001147 0.012087
GO:0035383 thioester metabolic process 4.12% (4/97) 3.14 0.001147 0.012087
GO:0006084 acetyl-CoA metabolic process 3.09% (3/97) 3.7 0.001635 0.016477
GO:0033865 nucleoside bisphosphate metabolic process 4.12% (4/97) 3.0 0.001619 0.016493
GO:0033875 ribonucleoside bisphosphate metabolic process 4.12% (4/97) 3.0 0.001619 0.016493
GO:0034032 purine nucleoside bisphosphate metabolic process 4.12% (4/97) 3.0 0.001619 0.016493
GO:0070717 poly-purine tract binding 3.09% (3/97) 3.64 0.001845 0.018388
GO:0003146 heart jogging 1.03% (1/97) 8.65 0.002482 0.021105
GO:0035469 determination of pancreatic left/right asymmetry 1.03% (1/97) 8.65 0.002482 0.021105
GO:0048496 maintenance of animal organ identity 1.03% (1/97) 8.65 0.002482 0.021105
GO:0060287 epithelial cilium movement involved in determination of left/right asymmetry 1.03% (1/97) 8.65 0.002482 0.021105
GO:0070121 Kupffer's vesicle development 1.03% (1/97) 8.65 0.002482 0.021105
GO:0071907 determination of digestive tract left/right asymmetry 1.03% (1/97) 8.65 0.002482 0.021105
GO:0071908 determination of intestine left/right asymmetry 1.03% (1/97) 8.65 0.002482 0.021105
GO:0071909 determination of stomach left/right asymmetry 1.03% (1/97) 8.65 0.002482 0.021105
GO:0071910 determination of liver left/right asymmetry 1.03% (1/97) 8.65 0.002482 0.021105
GO:0072189 ureter development 1.03% (1/97) 8.65 0.002482 0.021105
GO:0090178 regulation of establishment of planar polarity involved in neural tube closure 1.03% (1/97) 8.65 0.002482 0.021105
GO:0097543 ciliary inversin compartment 1.03% (1/97) 8.65 0.002482 0.021105
GO:2000167 regulation of planar cell polarity pathway involved in neural tube closure 1.03% (1/97) 8.65 0.002482 0.021105
GO:0047315 kynurenine-glyoxylate transaminase activity 1.03% (1/97) 8.65 0.002482 0.021105
GO:0047316 glutamine-phenylpyruvate transaminase activity 1.03% (1/97) 8.65 0.002482 0.021105
GO:0047804 cysteine-S-conjugate beta-lyase activity 1.03% (1/97) 8.65 0.002482 0.021105
GO:0090407 organophosphate biosynthetic process 6.19% (6/97) 2.04 0.003518 0.029651
GO:0008654 phospholipid biosynthetic process 4.12% (4/97) 2.64 0.003975 0.033199
GO:0016212 kynurenine-oxoglutarate transaminase activity 1.03% (1/97) 7.65 0.004957 0.039275
GO:0034275 kynurenic acid metabolic process 1.03% (1/97) 7.65 0.004957 0.039275
GO:0034276 kynurenic acid biosynthetic process 1.03% (1/97) 7.65 0.004957 0.039275
GO:0047536 2-aminoadipate transaminase activity 1.03% (1/97) 7.65 0.004957 0.039275
GO:0097052 L-kynurenine metabolic process 1.03% (1/97) 7.65 0.004957 0.039275
GO:0033097 amyloplast membrane 1.03% (1/97) 7.65 0.004957 0.039275
GO:0009259 ribonucleotide metabolic process 5.15% (5/97) 2.14 0.005664 0.044494
GO:0019693 ribose phosphate metabolic process 5.15% (5/97) 2.11 0.00625 0.048687
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_69 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_222 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_251 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_254 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (97) (download table)

InterPro Domains

GO Terms

Family Terms