Coexpression cluster: Cluster_50 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009532 plastid stroma 21.95% (27/123) 3.2 0.0 0.0
GO:0009570 chloroplast stroma 21.14% (26/123) 3.2 0.0 0.0
GO:0034357 photosynthetic membrane 13.01% (16/123) 3.26 0.0 0.0
GO:0042651 thylakoid membrane 13.01% (16/123) 3.28 0.0 0.0
GO:0009941 chloroplast envelope 14.63% (18/123) 2.84 0.0 0.0
GO:0055035 plastid thylakoid membrane 12.2% (15/123) 3.25 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 12.2% (15/123) 3.26 0.0 0.0
GO:0009526 plastid envelope 14.63% (18/123) 2.76 0.0 0.0
GO:0042170 plastid membrane 14.63% (18/123) 2.77 0.0 0.0
GO:0031967 organelle envelope 15.45% (19/123) 2.44 0.0 0.0
GO:0031975 envelope 15.45% (19/123) 2.44 0.0 0.0
GO:0009579 thylakoid 8.13% (10/123) 3.45 0.0 4e-06
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor 4.88% (6/123) 4.9 0.0 6e-06
GO:0009507 chloroplast 17.07% (21/123) 1.98 0.0 7e-06
GO:0033743 peptide-methionine (R)-S-oxide reductase activity 2.44% (3/123) 7.57 0.0 2.6e-05
GO:0009536 plastid 18.7% (23/123) 1.66 1e-06 6.5e-05
GO:0045038 protein import into chloroplast thylakoid membrane 2.44% (3/123) 6.9 2e-06 0.00013
GO:0009657 plastid organization 8.94% (11/123) 2.62 2e-06 0.000141
GO:0010287 plastoglobule 4.88% (6/123) 3.97 3e-06 0.000178
GO:0030091 protein repair 3.25% (4/123) 5.14 5e-06 0.000334
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors 4.88% (6/123) 3.73 7e-06 0.000419
GO:0017038 protein import 2.44% (3/123) 6.2 8e-06 0.000507
GO:0047746 chlorophyllase activity 1.63% (2/123) 7.73 2.9e-05 0.001677
GO:0009977 proton motive force dependent protein transmembrane transporter activity 1.63% (2/123) 7.31 5.9e-05 0.002852
GO:0070191 methionine-R-sulfoxide reductase activity 1.63% (2/123) 7.31 5.9e-05 0.002852
GO:0010196 nonphotochemical quenching 2.44% (3/123) 5.31 5.9e-05 0.003077
GO:1990066 energy quenching 2.44% (3/123) 5.31 5.9e-05 0.003077
GO:0097428 protein maturation by iron-sulfur cluster transfer 2.44% (3/123) 5.25 6.6e-05 0.003115
GO:0005622 intracellular anatomical structure 8.13% (10/123) 2.19 7.5e-05 0.003395
GO:0008236 serine-type peptidase activity 4.88% (6/123) 3.03 0.0001 0.003974
GO:0033281 TAT protein transport complex 1.63% (2/123) 6.99 9.8e-05 0.004002
GO:0043953 protein transport by the Tat complex 1.63% (2/123) 6.99 9.8e-05 0.004002
GO:0002089 lens morphogenesis in camera-type eye 1.63% (2/123) 6.99 9.8e-05 0.004002
GO:0006457 protein folding 5.69% (7/123) 2.71 0.000104 0.004022
GO:0017171 serine hydrolase activity 4.88% (6/123) 3.0 0.000115 0.004306
GO:0110102 ribulose bisphosphate carboxylase complex assembly 1.63% (2/123) 6.73 0.000146 0.005181
GO:0034336 misfolded RNA binding 1.63% (2/123) 6.73 0.000146 0.005181
GO:0061077 chaperone-mediated protein folding 4.07% (5/123) 3.31 0.000158 0.005457
GO:0051117 ATPase binding 3.25% (4/123) 3.82 0.000194 0.006348
GO:0031360 intrinsic component of thylakoid membrane 1.63% (2/123) 6.5 0.000204 0.006377
GO:0031361 integral component of thylakoid membrane 1.63% (2/123) 6.5 0.000204 0.006377
GO:0009658 chloroplast organization 6.5% (8/123) 2.35 0.000191 0.006415
GO:0004097 catechol oxidase activity 1.63% (2/123) 6.31 0.000272 0.007424
GO:0033793 aureusidin synthase activity 1.63% (2/123) 6.31 0.000272 0.007424
GO:0046992 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond 1.63% (2/123) 6.31 0.000272 0.007424
GO:0046993 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor 1.63% (2/123) 6.31 0.000272 0.007424
GO:1901708 (+)-3'-hydroxylarreatricin biosynthetic process 1.63% (2/123) 6.31 0.000272 0.007424
GO:1901709 (+)-larreatricin metabolic process 1.63% (2/123) 6.31 0.000272 0.007424
GO:0004252 serine-type endopeptidase activity 4.07% (5/123) 3.13 0.00028 0.007495
GO:0001742 oenocyte differentiation 1.63% (2/123) 5.99 0.000435 0.009834
GO:0007380 specification of segmental identity, head 1.63% (2/123) 5.99 0.000435 0.009834
GO:0035855 megakaryocyte development 1.63% (2/123) 5.99 0.000435 0.009834
GO:0048735 haltere morphogenesis 1.63% (2/123) 5.99 0.000435 0.009834
GO:0060044 negative regulation of cardiac muscle cell proliferation 1.63% (2/123) 5.99 0.000435 0.009834
GO:0060323 head morphogenesis 1.63% (2/123) 5.99 0.000435 0.009834
GO:0098751 bone cell development 1.63% (2/123) 5.99 0.000435 0.009834
GO:2000495 regulation of cell proliferation involved in compound eye morphogenesis 1.63% (2/123) 5.99 0.000435 0.009834
GO:2000497 positive regulation of cell proliferation involved in compound eye morphogenesis 1.63% (2/123) 5.99 0.000435 0.009834
GO:0007480 imaginal disc-derived leg morphogenesis 1.63% (2/123) 5.85 0.00053 0.011595
GO:0072002 Malpighian tubule development 1.63% (2/123) 5.85 0.00053 0.011595
GO:0042440 pigment metabolic process 5.69% (7/123) 2.32 0.000555 0.011942
GO:0045036 protein targeting to chloroplast 2.44% (3/123) 4.14 0.000671 0.013969
GO:0072596 establishment of protein localization to chloroplast 2.44% (3/123) 4.14 0.000671 0.013969
GO:0072598 protein localization to chloroplast 2.44% (3/123) 4.12 0.000708 0.014511
GO:0009368 endopeptidase Clp complex 1.63% (2/123) 5.61 0.000749 0.015116
GO:0048457 floral whorl morphogenesis 1.63% (2/123) 5.5 0.000872 0.017333
GO:0110165 cellular anatomical entity 73.98% (91/123) 0.3 0.000916 0.017936
GO:0016226 iron-sulfur cluster assembly 2.44% (3/123) 3.94 0.001004 0.018822
GO:0031163 metallo-sulfur cluster assembly 2.44% (3/123) 3.94 0.001004 0.018822
GO:0010319 stromule 2.44% (3/123) 3.94 0.001004 0.018822
GO:0007379 segment specification 1.63% (2/123) 5.31 0.001145 0.020302
GO:0060043 regulation of cardiac muscle cell proliferation 1.63% (2/123) 5.31 0.001145 0.020302
GO:0009767 photosynthetic electron transport chain 2.44% (3/123) 3.9 0.001101 0.02035
GO:1990748 cellular detoxification 4.07% (5/123) 2.69 0.001121 0.020419
GO:0031976 plastid thylakoid 3.25% (4/123) 3.09 0.001295 0.021243
GO:0010201 response to continuous far red light stimulus by the high-irradiance response system 1.63% (2/123) 5.22 0.001295 0.021508
GO:0055022 negative regulation of cardiac muscle tissue growth 1.63% (2/123) 5.22 0.001295 0.021508
GO:0061117 negative regulation of heart growth 1.63% (2/123) 5.22 0.001295 0.021508
GO:0009534 chloroplast thylakoid 3.25% (4/123) 3.11 0.001232 0.021559
GO:0044743 protein transmembrane import into intracellular organelle 2.44% (3/123) 3.83 0.001258 0.02171
GO:0044183 protein folding chaperone 2.44% (3/123) 3.77 0.001427 0.022835
GO:0042644 chloroplast nucleoid 2.44% (3/123) 3.77 0.001427 0.022835
GO:0007422 peripheral nervous system development 1.63% (2/123) 5.14 0.001454 0.022983
GO:0009408 response to heat 8.13% (10/123) 1.61 0.001681 0.026257
GO:0005575 cellular_component 73.98% (91/123) 0.28 0.001719 0.026538
GO:0042646 plastid nucleoid 2.44% (3/123) 3.63 0.001877 0.028634
GO:0032544 plastid translation 1.63% (2/123) 4.92 0.001983 0.02991
GO:0001216 DNA-binding transcription activator activity 3.25% (4/123) 2.92 0.002009 0.029955
GO:0048564 photosystem I assembly 1.63% (2/123) 4.85 0.002177 0.032095
GO:0009508 plastid chromosome 1.63% (2/123) 4.73 0.002591 0.037766
GO:0045638 negative regulation of myeloid cell differentiation 1.63% (2/123) 4.67 0.00281 0.040075
GO:0045913 positive regulation of carbohydrate metabolic process 1.63% (2/123) 4.67 0.00281 0.040075
GO:0045454 cell redox homeostasis 2.44% (3/123) 3.41 0.002926 0.041283
GO:0102194 protein-fructosamine 3-kinase activity 0.81% (1/123) 8.31 0.003147 0.042128
GO:0047884 FAD diphosphatase activity 0.81% (1/123) 8.31 0.003147 0.042128
GO:1901530 response to hypochlorite 0.81% (1/123) 8.31 0.003147 0.042128
GO:0010478 chlororespiration 0.81% (1/123) 8.31 0.003147 0.042128
GO:0010076 maintenance of floral meristem identity 1.63% (2/123) 4.61 0.003038 0.042404
GO:0045665 negative regulation of neuron differentiation 1.63% (2/123) 4.56 0.003274 0.04296
GO:0080006 internode patterning 1.63% (2/123) 4.56 0.003274 0.04296
GO:0000302 response to reactive oxygen species 6.5% (8/123) 1.7 0.003373 0.043816
GO:0016491 oxidoreductase activity 13.82% (17/123) 1.05 0.003469 0.044626
GO:0009773 photosynthetic electron transport in photosystem I 1.63% (2/123) 4.5 0.003519 0.044825
GO:0010154 fruit development 2.44% (3/123) 3.28 0.00372 0.046932
GO:0060216 definitive hemopoiesis 1.63% (2/123) 4.45 0.003772 0.047131
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_150 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_152 0.009 Orthogroups with 8 Potato genotypes Compare
Sequences (123) (download table)

InterPro Domains

GO Terms

Family Terms