Coexpression cluster: Cluster_6 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:2000022 regulation of jasmonic acid mediated signaling pathway 6.13% (16/261) 3.43 0.0 0.0
GO:0031347 regulation of defense response 16.48% (43/261) 1.67 0.0 0.0
GO:0006950 response to stress 46.74% (122/261) 0.74 0.0 0.0
GO:0009611 response to wounding 13.03% (34/261) 1.84 0.0 0.0
GO:0002831 regulation of response to biotic stimulus 13.41% (35/261) 1.65 0.0 1e-06
GO:0032101 regulation of response to external stimulus 13.79% (36/261) 1.49 0.0 1.1e-05
GO:0002238 response to molecule of fungal origin 6.51% (17/261) 2.4 0.0 1.3e-05
GO:0005886 plasma membrane 26.44% (69/261) 0.95 0.0 1.3e-05
GO:0050832 defense response to fungus 11.49% (30/261) 1.64 0.0 1.3e-05
GO:0050896 response to stimulus 55.17% (144/261) 0.51 0.0 1.3e-05
GO:0006952 defense response 26.05% (68/261) 0.95 0.0 1.3e-05
GO:0009694 jasmonic acid metabolic process 4.21% (11/261) 3.13 0.0 1.5e-05
GO:0080134 regulation of response to stress 18.01% (47/261) 1.18 0.0 2.3e-05
GO:0009620 response to fungus 14.56% (38/261) 1.35 0.0 2.4e-05
GO:0044419 biological process involved in interspecies interaction between organisms 27.97% (73/261) 0.86 0.0 2.7e-05
GO:0009605 response to external stimulus 33.33% (87/261) 0.74 0.0 4.1e-05
GO:0051707 response to other organism 26.82% (70/261) 0.84 0.0 8e-05
GO:0043207 response to external biotic stimulus 27.97% (73/261) 0.8 1e-06 0.000111
GO:0009266 response to temperature stimulus 14.94% (39/261) 1.21 1e-06 0.000125
GO:0098542 defense response to other organism 21.46% (56/261) 0.95 1e-06 0.000144
GO:0005515 protein binding 52.49% (137/261) 0.47 1e-06 0.000147
GO:0009607 response to biotic stimulus 27.97% (73/261) 0.78 1e-06 0.000165
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 1.92% (5/261) 4.69 1e-06 0.000169
GO:0106167 extracellular ATP signaling 2.3% (6/261) 4.06 2e-06 0.000193
GO:1990841 promoter-specific chromatin binding 3.07% (8/261) 3.27 2e-06 0.000224
GO:0048583 regulation of response to stimulus 24.14% (63/261) 0.83 3e-06 0.000295
GO:0071318 cellular response to ATP 2.3% (6/261) 3.86 4e-06 0.00039
GO:0009409 response to cold 11.11% (29/261) 1.34 5e-06 0.000494
GO:1901700 response to oxygen-containing compound 27.2% (71/261) 0.74 6e-06 0.000567
GO:0009695 jasmonic acid biosynthetic process 2.3% (6/261) 3.62 1e-05 0.000913
GO:0016020 membrane 40.61% (106/261) 0.53 1e-05 0.000915
GO:0006082 organic acid metabolic process 14.94% (39/261) 1.06 1.1e-05 0.000991
GO:0009269 response to desiccation 2.68% (7/261) 3.18 1.4e-05 0.001162
GO:0033198 response to ATP 2.3% (6/261) 3.53 1.4e-05 0.001182
GO:0042221 response to chemical 36.02% (94/261) 0.56 1.7e-05 0.001376
GO:0032787 monocarboxylic acid metabolic process 9.96% (26/261) 1.33 1.8e-05 0.001388
GO:0009963 positive regulation of flavonoid biosynthetic process 2.3% (6/261) 3.44 2.1e-05 0.001553
GO:0010178 IAA-amino acid conjugate hydrolase activity 1.15% (3/261) 5.64 2.4e-05 0.001561
GO:0010179 IAA-Ala conjugate hydrolase activity 1.15% (3/261) 5.64 2.4e-05 0.001561
GO:0010210 IAA-Phe conjugate hydrolase activity 1.15% (3/261) 5.64 2.4e-05 0.001561
GO:0010211 IAA-Leu conjugate hydrolase activity 1.15% (3/261) 5.64 2.4e-05 0.001561
GO:1990206 jasmonyl-Ile conjugate hydrolase activity 1.15% (3/261) 5.64 2.4e-05 0.001561
GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress 2.3% (6/261) 3.42 2.2e-05 0.001619
GO:0006631 fatty acid metabolic process 6.51% (17/261) 1.67 3.1e-05 0.001989
GO:0043436 oxoacid metabolic process 13.79% (36/261) 1.02 4.2e-05 0.002628
GO:0090357 regulation of tryptophan metabolic process 1.92% (5/261) 3.67 4.8e-05 0.002897
GO:2000068 regulation of defense response to insect 3.07% (8/261) 2.58 6.7e-05 0.004001
GO:0006521 regulation of cellular amino acid metabolic process 2.3% (6/261) 3.12 7e-05 0.004057
GO:0009937 regulation of gibberellic acid mediated signaling pathway 3.07% (8/261) 2.55 7.7e-05 0.004404
GO:2000679 positive regulation of transcription regulatory region DNA binding 1.15% (3/261) 5.11 8e-05 0.004481
GO:0005516 calmodulin binding 4.21% (11/261) 2.04 8.9e-05 0.004708
GO:0043620 regulation of DNA-templated transcription in response to stress 2.3% (6/261) 3.07 8.6e-05 0.00472
GO:0004683 calmodulin-dependent protein kinase activity 1.92% (5/261) 3.48 8.8e-05 0.004733
GO:0033238 regulation of cellular amine metabolic process 2.3% (6/261) 3.03 0.0001 0.005196
GO:0040008 regulation of growth 10.34% (27/261) 1.14 0.000109 0.005463
GO:0007263 nitric oxide mediated signal transduction 1.53% (4/261) 4.02 0.000108 0.005486
GO:0010033 response to organic substance 27.59% (72/261) 0.6 0.000116 0.005594
GO:0003674 molecular_function 70.88% (185/261) 0.25 0.000115 0.005665
GO:0051289 protein homotetramerization 2.3% (6/261) 2.98 0.000122 0.005792
GO:0000769 syncytium formation by mitosis without cytokinesis 0.77% (2/261) 6.64 0.000133 0.006184
GO:0007165 signal transduction 18.01% (47/261) 0.79 0.000143 0.00654
GO:0009751 response to salicylic acid 6.51% (17/261) 1.47 0.000163 0.007376
GO:0010200 response to chitin 6.13% (16/261) 1.52 0.000176 0.007794
GO:0009737 response to abscisic acid 9.58% (25/261) 1.14 0.000196 0.008432
GO:0043388 positive regulation of DNA binding 1.53% (4/261) 3.8 0.000195 0.008537
GO:0045089 positive regulation of innate immune response 4.6% (12/261) 1.8 0.000203 0.008583
GO:0045088 regulation of innate immune response 5.75% (15/261) 1.56 0.000209 0.008743
GO:0010112 regulation of systemic acquired resistance 1.92% (5/261) 3.17 0.000243 0.009978
GO:0002218 activation of innate immune response 3.83% (10/261) 1.99 0.000253 0.01011
GO:1904796 regulation of core promoter binding 0.77% (2/261) 6.23 0.000264 0.010121
GO:1904798 positive regulation of core promoter binding 0.77% (2/261) 6.23 0.000264 0.010121
GO:1990114 RNA polymerase II core complex assembly 0.77% (2/261) 6.23 0.000264 0.010121
GO:0009753 response to jasmonic acid 5.75% (15/261) 1.54 0.000251 0.010162
GO:0071215 cellular response to abscisic acid stimulus 2.68% (7/261) 2.49 0.000279 0.010541
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway 2.3% (6/261) 2.76 0.000283 0.010544
GO:0002758 innate immune response-activating signal transduction 3.07% (8/261) 2.26 0.0003 0.011024
GO:0004674 protein serine/threonine kinase activity 8.05% (21/261) 1.22 0.000334 0.012134
GO:0032103 positive regulation of response to external stimulus 6.51% (17/261) 1.37 0.000382 0.013703
GO:0005488 binding 60.54% (158/261) 0.27 0.000413 0.014433
GO:0051123 RNA polymerase II preinitiation complex assembly 1.15% (3/261) 4.35 0.000413 0.014607
GO:0002757 immune response-activating signal transduction 3.07% (8/261) 2.18 0.000441 0.015236
GO:0051510 regulation of unidimensional cell growth 3.83% (10/261) 1.87 0.00047 0.015636
GO:0014070 response to organic cyclic compound 10.34% (27/261) 1.01 0.000459 0.015655
GO:0010466 negative regulation of peptidase activity 2.3% (6/261) 2.62 0.000465 0.015676
GO:0031349 positive regulation of defense response 6.13% (16/261) 1.38 0.000527 0.016954
GO:0110165 cellular anatomical entity 70.11% (183/261) 0.22 0.000515 0.016962
GO:0070542 response to fatty acid 5.75% (15/261) 1.43 0.000525 0.017087
GO:0000976 transcription cis-regulatory region binding 9.96% (26/261) 1.01 0.000605 0.019242
GO:0001067 transcription regulatory region nucleic acid binding 9.96% (26/261) 1.0 0.000638 0.02006
GO:0001174 transcriptional start site selection at RNA polymerase II promoter 0.77% (2/261) 5.64 0.000655 0.020342
GO:0070897 transcription preinitiation complex assembly 1.15% (3/261) 4.11 0.000683 0.020991
GO:0046683 response to organophosphorus 2.3% (6/261) 2.5 0.000729 0.021678
GO:0030855 epithelial cell differentiation 2.3% (6/261) 2.5 0.000729 0.021678
GO:0051260 protein homooligomerization 2.68% (7/261) 2.26 0.000716 0.021767
GO:0031956 medium-chain fatty acid-CoA ligase activity 1.15% (3/261) 4.06 0.000765 0.02251
GO:0051262 protein tetramerization 2.3% (6/261) 2.47 0.000803 0.023397
GO:0072330 monocarboxylic acid biosynthetic process 4.98% (13/261) 1.49 0.000853 0.024113
GO:0033993 response to lipid 14.94% (39/261) 0.76 0.00085 0.024259
GO:1990837 sequence-specific double-stranded DNA binding 9.96% (26/261) 0.97 0.000846 0.024382
GO:1901668 regulation of superoxide dismutase activity 0.77% (2/261) 5.42 0.000912 0.024537
GO:1901671 positive regulation of superoxide dismutase activity 0.77% (2/261) 5.42 0.000912 0.024537
GO:0042789 mRNA transcription by RNA polymerase II 0.77% (2/261) 5.42 0.000912 0.024537
GO:0080092 regulation of pollen tube growth 2.68% (7/261) 2.21 0.000883 0.024699
GO:0052547 regulation of peptidase activity 2.68% (7/261) 2.2 0.000906 0.025088
GO:0009414 response to water deprivation 9.2% (24/261) 1.01 0.000946 0.025187
GO:0008150 biological_process 70.88% (185/261) 0.2 0.000965 0.02546
GO:0050789 regulation of biological process 42.91% (112/261) 0.35 0.000986 0.025778
GO:0018858 benzoate-CoA ligase activity 1.15% (3/261) 3.9 0.001046 0.026832
GO:0106286 (E)-caffeate-CoA ligase activity 1.15% (3/261) 3.9 0.001046 0.026832
GO:0045165 cell fate commitment 1.92% (5/261) 2.7 0.001079 0.027432
GO:0097305 response to alcohol 9.58% (25/261) 0.97 0.001089 0.027437
GO:0097306 cellular response to alcohol 2.68% (7/261) 2.15 0.001134 0.028058
GO:0004866 endopeptidase inhibitor activity 1.92% (5/261) 2.68 0.001165 0.028094
GO:0002833 positive regulation of response to biotic stimulus 5.75% (15/261) 1.32 0.001157 0.028151
GO:0002253 activation of immune response 3.83% (10/261) 1.71 0.001129 0.028195
GO:0106290 trans-cinnamate-CoA ligase activity 1.15% (3/261) 3.86 0.001152 0.028264
GO:0035580 specific granule lumen 0.77% (2/261) 5.23 0.001211 0.028952
GO:0061135 endopeptidase regulator activity 1.92% (5/261) 2.63 0.001353 0.031274
GO:0005575 cellular_component 70.11% (183/261) 0.2 0.001343 0.031311
GO:0014074 response to purine-containing compound 2.3% (6/261) 2.33 0.001343 0.03156
GO:0019752 carboxylic acid metabolic process 10.73% (28/261) 0.89 0.001336 0.031656
GO:0016207 4-coumarate-CoA ligase activity 1.15% (3/261) 3.77 0.001385 0.031744
GO:0002764 immune response-regulating signaling pathway 4.21% (11/261) 1.55 0.001506 0.034248
GO:0022604 regulation of cell morphogenesis 4.21% (11/261) 1.55 0.001549 0.034934
GO:0009415 response to water 9.2% (24/261) 0.95 0.001628 0.036438
GO:0001101 response to acid chemical 9.58% (25/261) 0.93 0.00165 0.036636
GO:0050776 regulation of immune response 7.66% (20/261) 1.06 0.001724 0.037968
GO:0050778 positive regulation of immune response 4.98% (13/261) 1.38 0.001747 0.038183
GO:0001099 basal RNA polymerase II transcription machinery binding 1.53% (4/261) 2.96 0.001794 0.038899
GO:0071465 cellular response to desiccation 0.77% (2/261) 4.9 0.001929 0.040573
GO:0097550 transcription preinitiation complex 0.77% (2/261) 4.9 0.001929 0.040573
GO:0046777 protein autophosphorylation 6.13% (16/261) 1.2 0.001907 0.040722
GO:0065007 biological regulation 45.59% (119/261) 0.31 0.001906 0.041006
GO:0001098 basal transcription machinery binding 1.53% (4/261) 2.92 0.001971 0.041148
GO:0140296 general transcription initiation factor binding 1.53% (4/261) 2.9 0.002064 0.04277
GO:2000677 regulation of transcription regulatory region DNA binding 1.15% (3/261) 3.56 0.002089 0.042961
GO:0016143 S-glycoside metabolic process 3.83% (10/261) 1.57 0.002273 0.044764
GO:0019757 glycosinolate metabolic process 3.83% (10/261) 1.57 0.002273 0.044764
GO:0019760 glucosinolate metabolic process 3.83% (10/261) 1.57 0.002273 0.044764
GO:0006633 fatty acid biosynthetic process 3.07% (8/261) 1.8 0.002289 0.044781
GO:0023051 regulation of signaling 13.03% (34/261) 0.74 0.002203 0.044968
GO:0031408 oxylipin biosynthetic process 1.53% (4/261) 2.87 0.002259 0.045463
GO:0010377 guard cell fate commitment 0.77% (2/261) 4.77 0.002348 0.0456
GO:0016251 RNA polymerase II general transcription initiation factor activity 1.15% (3/261) 3.53 0.002252 0.045642
GO:0010374 stomatal complex development 1.15% (3/261) 3.49 0.002423 0.046411
GO:0009966 regulation of signal transduction 12.26% (32/261) 0.76 0.002439 0.046415
GO:0065009 regulation of molecular function 9.58% (25/261) 0.89 0.002461 0.046511
GO:1900150 regulation of defense response to fungus 3.07% (8/261) 1.79 0.002415 0.046588
GO:0051346 negative regulation of hydrolase activity 2.3% (6/261) 2.15 0.002529 0.047158
GO:0019899 enzyme binding 9.96% (26/261) 0.86 0.002526 0.047418
GO:0031407 oxylipin metabolic process 1.53% (4/261) 2.82 0.002575 0.0477
GO:0003690 double-stranded DNA binding 9.96% (26/261) 0.86 0.002606 0.047958
GO:0030414 peptidase inhibitor activity 1.92% (5/261) 2.4 0.002724 0.049801
GO:0061827 sperm head 0.77% (2/261) 4.64 0.002805 0.049968
GO:0090547 response to low humidity 0.77% (2/261) 4.64 0.002805 0.049968
GO:0001173 DNA-templated transcriptional start site selection 0.77% (2/261) 4.64 0.002805 0.049968
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_8 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_25 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_112 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_169 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_213 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_232 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (261) (download table)

InterPro Domains

GO Terms

Family Terms