Coexpression cluster: Cluster_98 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0010200 response to chitin 23.66% (31/131) 3.47 0.0 0.0
GO:0009414 response to water deprivation 25.95% (34/131) 2.51 0.0 0.0
GO:0009415 response to water 25.95% (34/131) 2.45 0.0 0.0
GO:0001067 transcription regulatory region nucleic acid binding 25.95% (34/131) 2.38 0.0 0.0
GO:0010243 response to organonitrogen compound 24.43% (32/131) 2.5 0.0 0.0
GO:0001101 response to acid chemical 25.95% (34/131) 2.37 0.0 0.0
GO:1990837 sequence-specific double-stranded DNA binding 25.95% (34/131) 2.36 0.0 0.0
GO:0000976 transcription cis-regulatory region binding 25.95% (34/131) 2.39 0.0 0.0
GO:0003690 double-stranded DNA binding 25.95% (34/131) 2.24 0.0 0.0
GO:1901698 response to nitrogen compound 24.43% (32/131) 2.32 0.0 0.0
GO:0043565 sequence-specific DNA binding 26.72% (35/131) 2.15 0.0 0.0
GO:0050826 response to freezing 9.92% (13/131) 4.31 0.0 0.0
GO:0098542 defense response to other organism 35.11% (46/131) 1.66 0.0 0.0
GO:0009409 response to cold 22.14% (29/131) 2.33 0.0 0.0
GO:0003700 DNA-binding transcription factor activity 22.14% (29/131) 2.31 0.0 0.0
GO:1901700 response to oxygen-containing compound 42.75% (56/131) 1.39 0.0 0.0
GO:0043207 response to external biotic stimulus 41.98% (55/131) 1.39 0.0 0.0
GO:0006950 response to stress 57.25% (75/131) 1.03 0.0 0.0
GO:0010035 response to inorganic substance 32.06% (42/131) 1.71 0.0 0.0
GO:0009607 response to biotic stimulus 41.98% (55/131) 1.37 0.0 0.0
GO:0044419 biological process involved in interspecies interaction between organisms 40.46% (53/131) 1.39 0.0 0.0
GO:0051707 response to other organism 39.69% (52/131) 1.41 0.0 0.0
GO:0050793 regulation of developmental process 33.59% (44/131) 1.6 0.0 0.0
GO:0006952 defense response 37.4% (49/131) 1.47 0.0 0.0
GO:0140110 transcription regulator activity 22.9% (30/131) 2.08 0.0 0.0
GO:0009755 hormone-mediated signaling pathway 20.61% (27/131) 2.18 0.0 0.0
GO:0005634 nucleus 37.4% (49/131) 1.39 0.0 0.0
GO:0007165 signal transduction 31.3% (41/131) 1.59 0.0 0.0
GO:0009605 response to external stimulus 45.04% (59/131) 1.18 0.0 0.0
GO:1902680 positive regulation of RNA biosynthetic process 20.61% (27/131) 2.11 0.0 0.0
GO:1903508 positive regulation of nucleic acid-templated transcription 20.61% (27/131) 2.11 0.0 0.0
GO:0010557 positive regulation of macromolecule biosynthetic process 22.14% (29/131) 2.0 0.0 0.0
GO:0003677 DNA binding 27.48% (36/131) 1.7 0.0 0.0
GO:0051254 positive regulation of RNA metabolic process 21.37% (28/131) 2.02 0.0 0.0
GO:0045935 positive regulation of nucleobase-containing compound metabolic process 22.14% (29/131) 1.95 0.0 0.0
GO:0009408 response to heat 15.27% (20/131) 2.52 0.0 0.0
GO:0042221 response to chemical 49.62% (65/131) 1.02 0.0 0.0
GO:0045893 positive regulation of DNA-templated transcription 19.85% (26/131) 2.07 0.0 0.0
GO:0009628 response to abiotic stimulus 42.75% (56/131) 1.16 0.0 0.0
GO:0005515 protein binding 64.12% (84/131) 0.76 0.0 0.0
GO:0031328 positive regulation of cellular biosynthetic process 22.14% (29/131) 1.82 0.0 0.0
GO:0002252 immune effector process 7.63% (10/131) 3.86 0.0 0.0
GO:0010033 response to organic substance 40.46% (53/131) 1.15 0.0 0.0
GO:0009891 positive regulation of biosynthetic process 22.14% (29/131) 1.8 0.0 0.0
GO:0050896 response to stimulus 64.12% (84/131) 0.73 0.0 0.0
GO:0009266 response to temperature stimulus 22.14% (29/131) 1.78 0.0 0.0
GO:0048506 regulation of timing of meristematic phase transition 8.4% (11/131) 3.51 0.0 0.0
GO:0048510 regulation of timing of transition from vegetative to reproductive phase 8.4% (11/131) 3.51 0.0 0.0
GO:0050794 regulation of cellular process 53.44% (70/131) 0.87 0.0 0.0
GO:0010371 regulation of gibberellin biosynthetic process 5.34% (7/131) 4.82 0.0 0.0
GO:0050789 regulation of biological process 58.02% (76/131) 0.79 0.0 0.0
GO:0048518 positive regulation of biological process 38.17% (50/131) 1.14 0.0 0.0
GO:0006355 regulation of DNA-templated transcription 25.95% (34/131) 1.53 0.0 0.0
GO:2001141 regulation of RNA biosynthetic process 25.95% (34/131) 1.52 0.0 0.0
GO:1903506 regulation of nucleic acid-templated transcription 25.95% (34/131) 1.52 0.0 0.0
GO:0040034 regulation of development, heterochronic 8.4% (11/131) 3.36 0.0 0.0
GO:0048583 regulation of response to stimulus 32.82% (43/131) 1.28 0.0 0.0
GO:0048522 positive regulation of cellular process 32.82% (43/131) 1.25 0.0 1e-06
GO:0051252 regulation of RNA metabolic process 26.72% (35/131) 1.43 0.0 1e-06
GO:0048509 regulation of meristem development 8.4% (11/131) 3.18 0.0 1e-06
GO:0002679 respiratory burst involved in defense response 3.82% (5/131) 5.64 0.0 1e-06
GO:0051173 positive regulation of nitrogen compound metabolic process 22.9% (30/131) 1.56 0.0 2e-06
GO:0010556 regulation of macromolecule biosynthetic process 27.48% (36/131) 1.37 0.0 2e-06
GO:0031325 positive regulation of cellular metabolic process 23.66% (31/131) 1.51 0.0 2e-06
GO:0050832 defense response to fungus 15.27% (20/131) 2.05 0.0 2e-06
GO:0009889 regulation of biosynthetic process 30.53% (40/131) 1.25 0.0 2e-06
GO:0019219 regulation of nucleobase-containing compound metabolic process 27.48% (36/131) 1.35 0.0 2e-06
GO:0016143 S-glycoside metabolic process 9.16% (12/131) 2.83 0.0 4e-06
GO:0019757 glycosinolate metabolic process 9.16% (12/131) 2.83 0.0 4e-06
GO:0019760 glucosinolate metabolic process 9.16% (12/131) 2.83 0.0 4e-06
GO:0010192 mucilage biosynthetic process 5.34% (7/131) 4.11 0.0 4e-06
GO:0048354 mucilage biosynthetic process involved in seed coat development 4.58% (6/131) 4.56 0.0 5e-06
GO:0065007 biological regulation 58.78% (77/131) 0.68 0.0 5e-06
GO:0031326 regulation of cellular biosynthetic process 29.01% (38/131) 1.23 0.0 7e-06
GO:0010604 positive regulation of macromolecule metabolic process 22.9% (30/131) 1.45 0.0 7e-06
GO:0032101 regulation of response to external stimulus 16.79% (22/131) 1.77 0.0 9e-06
GO:0006970 response to osmotic stress 18.32% (24/131) 1.67 0.0 1e-05
GO:0009937 regulation of gibberellic acid mediated signaling pathway 6.11% (8/131) 3.54 0.0 1e-05
GO:0009631 cold acclimation 5.34% (7/131) 3.84 1e-06 1.4e-05
GO:0009725 response to hormone 26.72% (35/131) 1.25 1e-06 1.5e-05
GO:0009651 response to salt stress 16.03% (21/131) 1.75 1e-06 2.1e-05
GO:0004842 ubiquitin-protein transferase activity 9.92% (13/131) 2.41 1e-06 2.3e-05
GO:0080134 regulation of response to stress 21.37% (28/131) 1.43 1e-06 2.4e-05
GO:0009611 response to wounding 13.74% (18/131) 1.92 1e-06 2.7e-05
GO:0006979 response to oxidative stress 14.5% (19/131) 1.85 1e-06 2.7e-05
GO:0009620 response to fungus 17.56% (23/131) 1.62 1e-06 2.7e-05
GO:0019787 ubiquitin-like protein transferase activity 9.92% (13/131) 2.36 2e-06 3.2e-05
GO:0000987 cis-regulatory region sequence-specific DNA binding 8.4% (11/131) 2.62 2e-06 3.7e-05
GO:0009893 positive regulation of metabolic process 23.66% (31/131) 1.3 2e-06 3.7e-05
GO:0051171 regulation of nitrogen compound metabolic process 30.53% (40/131) 1.07 2e-06 4.3e-05
GO:0023051 regulation of signaling 20.61% (27/131) 1.41 3e-06 4.7e-05
GO:0010646 regulation of cell communication 20.61% (27/131) 1.39 3e-06 5.3e-05
GO:0009719 response to endogenous stimulus 26.72% (35/131) 1.15 3e-06 6.1e-05
GO:0031347 regulation of defense response 16.03% (21/131) 1.63 4e-06 6.5e-05
GO:0048359 mucilage metabolic process involved in seed coat development 5.34% (7/131) 3.46 4e-06 6.6e-05
GO:0019747 regulation of isoprenoid metabolic process 5.34% (7/131) 3.45 4e-06 6.8e-05
GO:0043455 regulation of secondary metabolic process 8.4% (11/131) 2.47 5e-06 9e-05
GO:0010468 regulation of gene expression 27.48% (36/131) 1.1 5e-06 9.2e-05
GO:0071289 cellular response to nickel ion 2.29% (3/131) 6.35 6e-06 9.8e-05
GO:0009938 negative regulation of gibberellic acid mediated signaling pathway 4.58% (6/131) 3.75 6e-06 0.0001
GO:0031323 regulation of cellular metabolic process 32.06% (42/131) 0.97 6e-06 0.000104
GO:0006790 sulfur compound metabolic process 11.45% (15/131) 1.98 7e-06 0.00011
GO:0009736 cytokinin-activated signaling pathway 4.58% (6/131) 3.71 7e-06 0.000114
GO:0045730 respiratory burst 3.82% (5/131) 4.24 7e-06 0.000115
GO:0008150 biological_process 79.39% (104/131) 0.37 9e-06 0.00014
GO:0009733 response to auxin 10.69% (14/131) 2.03 1e-05 0.000147
GO:0002376 immune system process 14.5% (19/131) 1.65 1e-05 0.000154
GO:0051510 regulation of unidimensional cell growth 6.87% (9/131) 2.71 1.1e-05 0.00016
GO:0019222 regulation of metabolic process 35.11% (46/131) 0.87 1.4e-05 0.000208
GO:0010191 mucilage metabolic process 5.34% (7/131) 3.16 1.5e-05 0.000223
GO:0003676 nucleic acid binding 29.01% (38/131) 1.0 1.5e-05 0.000226
GO:0071497 cellular response to freezing 3.05% (4/131) 4.73 1.6e-05 0.000236
GO:0009642 response to light intensity 8.4% (11/131) 2.3 1.7e-05 0.000241
GO:0009880 embryonic pattern specification 4.58% (6/131) 3.49 1.7e-05 0.000243
GO:0022414 reproductive process 32.82% (43/131) 0.9 1.8e-05 0.000258
GO:0009987 cellular process 70.23% (92/131) 0.43 2e-05 0.00028
GO:0009966 regulation of signal transduction 18.32% (24/131) 1.34 2.2e-05 0.000301
GO:0140096 catalytic activity, acting on a protein 22.9% (30/131) 1.15 2.3e-05 0.000313
GO:0043231 intracellular membrane-bounded organelle 52.67% (69/131) 0.59 2.3e-05 0.000316
GO:0009873 ethylene-activated signaling pathway 5.34% (7/131) 3.06 2.3e-05 0.00032
GO:0005488 binding 67.94% (89/131) 0.44 2.5e-05 0.000344
GO:0080090 regulation of primary metabolic process 29.77% (39/131) 0.94 2.8e-05 0.00038
GO:0110165 cellular anatomical entity 77.1% (101/131) 0.36 3.1e-05 0.000408
GO:0010565 regulation of cellular ketone metabolic process 7.63% (10/131) 2.33 3.3e-05 0.000431
GO:0019855 calcium channel inhibitor activity 1.53% (2/131) 7.64 3.3e-05 0.000433
GO:0015117 thiosulfate transmembrane transporter activity 1.53% (2/131) 7.64 3.3e-05 0.000433
GO:0015709 thiosulfate transport 1.53% (2/131) 7.64 3.3e-05 0.000433
GO:0043227 membrane-bounded organelle 52.67% (69/131) 0.58 3.4e-05 0.000438
GO:0048584 positive regulation of response to stimulus 16.79% (22/131) 1.37 3.7e-05 0.000467
GO:0002831 regulation of response to biotic stimulus 12.98% (17/131) 1.6 4.7e-05 0.000586
GO:0048519 negative regulation of biological process 29.01% (38/131) 0.92 5.1e-05 0.000639
GO:1901657 glycosyl compound metabolic process 9.16% (12/131) 2.0 5.2e-05 0.000643
GO:0009737 response to abscisic acid 12.98% (17/131) 1.58 5.4e-05 0.000668
GO:0046890 regulation of lipid biosynthetic process 6.87% (9/131) 2.41 5.5e-05 0.00067
GO:0034605 cellular response to heat 5.34% (7/131) 2.85 5.7e-05 0.000696
GO:0015292 uniporter activity 1.53% (2/131) 7.22 6.7e-05 0.000784
GO:0015141 succinate transmembrane transporter activity 1.53% (2/131) 7.22 6.7e-05 0.000784
GO:0071422 succinate transmembrane transport 1.53% (2/131) 7.22 6.7e-05 0.000784
GO:0005575 cellular_component 77.1% (101/131) 0.34 6.9e-05 0.000798
GO:0000302 response to reactive oxygen species 8.4% (11/131) 2.07 6.8e-05 0.000799
GO:0010193 response to ozone 4.58% (6/131) 3.14 6.6e-05 0.0008
GO:0033993 response to lipid 19.85% (26/131) 1.17 7.2e-05 0.000831
GO:0000160 phosphorelay signal transduction system 5.34% (7/131) 2.79 7.6e-05 0.000865
GO:2000280 regulation of root development 6.11% (8/131) 2.54 7.8e-05 0.000891
GO:0010045 response to nickel cation 2.29% (3/131) 5.16 8e-05 0.000905
GO:0060255 regulation of macromolecule metabolic process 29.01% (38/131) 0.88 9.7e-05 0.001092
GO:1990246 uniplex complex 1.53% (2/131) 6.9 0.000111 0.001217
GO:0015744 succinate transport 1.53% (2/131) 6.9 0.000111 0.001217
GO:0017077 oxidative phosphorylation uncoupler activity 1.53% (2/131) 6.9 0.000111 0.001217
GO:0004722 protein serine/threonine phosphatase activity 3.82% (5/131) 3.38 0.000126 0.001361
GO:0022604 regulation of cell morphogenesis 6.87% (9/131) 2.25 0.000125 0.001364
GO:0002682 regulation of immune system process 12.21% (16/131) 1.51 0.000155 0.001675
GO:0048585 negative regulation of response to stimulus 14.5% (19/131) 1.35 0.00016 0.001715
GO:0090527 actin filament reorganization 1.53% (2/131) 6.64 0.000166 0.001739
GO:0015729 oxaloacetate transport 1.53% (2/131) 6.64 0.000166 0.001739
GO:1902356 oxaloacetate(2-) transmembrane transport 1.53% (2/131) 6.64 0.000166 0.001739
GO:0051865 protein autoubiquitination 4.58% (6/131) 2.88 0.000181 0.001892
GO:0043229 intracellular organelle 55.73% (73/131) 0.48 0.000184 0.001902
GO:0048831 regulation of shoot system development 7.63% (10/131) 2.02 0.000193 0.001984
GO:0048580 regulation of post-embryonic development 12.21% (16/131) 1.49 0.000194 0.001984
GO:0048825 cotyledon development 4.58% (6/131) 2.85 0.000198 0.002001
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 3.05% (4/131) 3.81 0.000198 0.00201
GO:0010440 stomatal lineage progression 2.29% (3/131) 4.72 0.000204 0.002049
GO:0003674 molecular_function 74.81% (98/131) 0.32 0.000212 0.002116
GO:0043226 organelle 55.73% (73/131) 0.47 0.000225 0.002221
GO:0097305 response to alcohol 12.98% (17/131) 1.41 0.000225 0.002228
GO:0016567 protein ubiquitination 9.16% (12/131) 1.76 0.000233 0.002286
GO:0009867 jasmonic acid mediated signaling pathway 5.34% (7/131) 2.52 0.000238 0.002321
GO:0036211 protein modification process 20.61% (27/131) 1.02 0.000284 0.002752
GO:0035556 intracellular signal transduction 9.92% (13/131) 1.64 0.000287 0.002768
GO:0002218 activation of innate immune response 5.34% (7/131) 2.47 0.000299 0.002864
GO:0052636 arabinosyltransferase activity 1.53% (2/131) 6.22 0.000308 0.002898
GO:2000026 regulation of multicellular organismal development 13.74% (18/131) 1.32 0.000311 0.002908
GO:1901403 positive regulation of tetrapyrrole metabolic process 2.29% (3/131) 4.52 0.000308 0.002912
GO:0035435 phosphate ion transmembrane transport 2.29% (3/131) 4.52 0.000308 0.002912
GO:0032446 protein modification by small protein conjugation 9.16% (12/131) 1.71 0.000324 0.003012
GO:0008272 sulfate transport 2.29% (3/131) 4.48 0.000332 0.00307
GO:0050776 regulation of immune response 10.69% (14/131) 1.54 0.000347 0.003193
GO:0045089 positive regulation of innate immune response 6.11% (8/131) 2.21 0.000362 0.003307
GO:0071622 regulation of granulocyte chemotaxis 1.53% (2/131) 6.05 0.000395 0.003478
GO:0071624 positive regulation of granulocyte chemotaxis 1.53% (2/131) 6.05 0.000395 0.003478
GO:0090022 regulation of neutrophil chemotaxis 1.53% (2/131) 6.05 0.000395 0.003478
GO:0090023 positive regulation of neutrophil chemotaxis 1.53% (2/131) 6.05 0.000395 0.003478
GO:0015131 oxaloacetate transmembrane transporter activity 1.53% (2/131) 6.05 0.000395 0.003478
GO:0015139 alpha-ketoglutarate transmembrane transporter activity 1.53% (2/131) 6.05 0.000395 0.003478
GO:0019216 regulation of lipid metabolic process 6.87% (9/131) 2.03 0.000385 0.003501
GO:0022603 regulation of anatomical structure morphogenesis 9.16% (12/131) 1.67 0.000412 0.00361
GO:0051301 cell division 6.87% (9/131) 1.99 0.000473 0.004117
GO:0034704 calcium channel complex 1.53% (2/131) 5.9 0.000493 0.00418
GO:1902622 regulation of neutrophil migration 1.53% (2/131) 5.9 0.000493 0.00418
GO:1902624 positive regulation of neutrophil migration 1.53% (2/131) 5.9 0.000493 0.00418
GO:0062211 root regeneration 1.53% (2/131) 5.9 0.000493 0.00418
GO:0010648 negative regulation of cell communication 9.92% (13/131) 1.56 0.000497 0.00419
GO:0023057 negative regulation of signaling 9.92% (13/131) 1.56 0.00049 0.00424
GO:0032103 positive regulation of response to external stimulus 8.4% (11/131) 1.74 0.000506 0.004245
GO:0010187 negative regulation of seed germination 3.05% (4/131) 3.44 0.000529 0.004414
GO:0009909 regulation of flower development 6.87% (9/131) 1.96 0.000565 0.004693
GO:0015740 C4-dicarboxylate transport 2.29% (3/131) 4.22 0.00057 0.004711
GO:0062012 regulation of small molecule metabolic process 7.63% (10/131) 1.8 0.000631 0.005165
GO:0080164 regulation of nitric oxide metabolic process 2.29% (3/131) 4.16 0.000643 0.005182
GO:1901564 organonitrogen compound metabolic process 34.35% (45/131) 0.66 0.00063 0.005185
GO:0002684 positive regulation of immune system process 7.63% (10/131) 1.8 0.000637 0.005186
GO:0019748 secondary metabolic process 12.21% (16/131) 1.33 0.000641 0.005193
GO:0009416 response to light stimulus 16.03% (21/131) 1.1 0.000701 0.005628
GO:0005246 calcium channel regulator activity 1.53% (2/131) 5.64 0.00072 0.005719
GO:0010151 chloroplast elongation 1.53% (2/131) 5.64 0.00072 0.005719
GO:0004721 phosphoprotein phosphatase activity 3.82% (5/131) 2.8 0.000799 0.006318
GO:0090708 specification of plant organ axis polarity 2.29% (3/131) 4.02 0.00085 0.006623
GO:0051561 positive regulation of mitochondrial calcium ion concentration 1.53% (2/131) 5.52 0.000849 0.006647
GO:0047517 1,4-beta-D-xylan synthase activity 1.53% (2/131) 5.52 0.000849 0.006647
GO:0009687 abscisic acid metabolic process 2.29% (3/131) 4.0 0.000896 0.006915
GO:0043288 apocarotenoid metabolic process 2.29% (3/131) 4.0 0.000896 0.006915
GO:0002253 activation of immune response 5.34% (7/131) 2.19 0.000941 0.0072
GO:2000022 regulation of jasmonic acid mediated signaling pathway 3.82% (5/131) 2.75 0.000941 0.007233
GO:0009863 salicylic acid mediated signaling pathway 3.82% (5/131) 2.74 0.00096 0.007311
GO:0009700 indole phytoalexin biosynthetic process 2.29% (3/131) 3.95 0.000992 0.007348
GO:0010120 camalexin biosynthetic process 2.29% (3/131) 3.95 0.000992 0.007348
GO:0046217 indole phytoalexin metabolic process 2.29% (3/131) 3.95 0.000992 0.007348
GO:0052317 camalexin metabolic process 2.29% (3/131) 3.95 0.000992 0.007348
GO:0070417 cellular response to cold 3.82% (5/131) 2.73 0.000999 0.007368
GO:0008200 ion channel inhibitor activity 1.53% (2/131) 5.41 0.000988 0.007453
GO:0016248 channel inhibitor activity 1.53% (2/131) 5.41 0.000988 0.007453
GO:0006470 protein dephosphorylation 3.82% (5/131) 2.72 0.001019 0.007481
GO:0009751 response to salicylic acid 7.63% (10/131) 1.7 0.001073 0.007839
GO:0045088 regulation of innate immune response 6.87% (9/131) 1.82 0.001101 0.008011
GO:0010628 positive regulation of gene expression 7.63% (10/131) 1.7 0.001108 0.008027
GO:0036444 calcium import into the mitochondrion 1.53% (2/131) 5.31 0.001137 0.008095
GO:0043610 regulation of carbohydrate utilization 1.53% (2/131) 5.31 0.001137 0.008095
GO:0070647 protein modification by small protein conjugation or removal 9.16% (12/131) 1.51 0.00113 0.008114
GO:0031349 positive regulation of defense response 7.63% (10/131) 1.69 0.001126 0.008123
GO:0048523 negative regulation of cellular process 20.61% (27/131) 0.88 0.001247 0.008838
GO:0009314 response to radiation 16.03% (21/131) 1.04 0.001259 0.008887
GO:0070483 detection of hypoxia 1.53% (2/131) 5.22 0.001297 0.009074
GO:0090141 positive regulation of mitochondrial fission 1.53% (2/131) 5.22 0.001297 0.009074
GO:0003032 detection of oxygen 1.53% (2/131) 5.13 0.001467 0.010174
GO:0090140 regulation of mitochondrial fission 1.53% (2/131) 5.13 0.001467 0.010174
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 3.82% (5/131) 2.59 0.001509 0.010421
GO:0010029 regulation of seed germination 5.34% (7/131) 2.07 0.001519 0.010451
GO:0051128 regulation of cellular component organization 12.98% (17/131) 1.16 0.001549 0.010613
GO:0060173 limb development 1.53% (2/131) 5.05 0.001646 0.01123
GO:0042742 defense response to bacterium 10.69% (14/131) 1.3 0.001675 0.011379
GO:0048366 leaf development 5.34% (7/131) 2.04 0.0017 0.0115
GO:1990110 callus formation 3.05% (4/131) 2.98 0.001715 0.01155
GO:0051093 negative regulation of developmental process 8.4% (11/131) 1.51 0.001782 0.011906
GO:1902644 tertiary alcohol metabolic process 2.29% (3/131) 3.66 0.00178 0.011944
GO:0001558 regulation of cell growth 6.87% (9/131) 1.7 0.001897 0.012622
GO:0009757 hexose mediated signaling 1.53% (2/131) 4.9 0.002036 0.013437
GO:0010255 glucose mediated signaling pathway 1.53% (2/131) 4.9 0.002036 0.013437
GO:0009612 response to mechanical stimulus 3.05% (4/131) 2.91 0.002069 0.013603
GO:0097501 stress response to metal ion 2.29% (3/131) 3.58 0.002083 0.013639
GO:0048574 long-day photoperiodism, flowering 2.29% (3/131) 3.54 0.002245 0.014587
GO:0051560 mitochondrial calcium ion homeostasis 1.53% (2/131) 4.83 0.002245 0.014642
GO:1901419 regulation of response to alcohol 6.11% (8/131) 1.79 0.002344 0.015109
GO:1905957 regulation of cellular response to alcohol 6.11% (8/131) 1.79 0.002344 0.015109
GO:0048638 regulation of developmental growth 8.4% (11/131) 1.46 0.002366 0.015191
GO:0015140 malate transmembrane transporter activity 1.53% (2/131) 4.76 0.002464 0.015696
GO:0071423 malate transmembrane transport 1.53% (2/131) 4.76 0.002464 0.015696
GO:0061630 ubiquitin protein ligase activity 4.58% (6/131) 2.14 0.002545 0.015841
GO:0006972 hyperosmotic response 4.58% (6/131) 2.14 0.002514 0.015891
GO:0042542 response to hydrogen peroxide 4.58% (6/131) 2.14 0.002514 0.015891
GO:1900140 regulation of seedling development 5.34% (7/131) 1.93 0.002543 0.015892
GO:1900057 positive regulation of leaf senescence 3.05% (4/131) 2.83 0.002525 0.015899
GO:0051094 positive regulation of developmental process 9.16% (12/131) 1.37 0.00254 0.015933
GO:0015116 sulfate transmembrane transporter activity 1.53% (2/131) 4.7 0.002693 0.016635
GO:1902358 sulfate transmembrane transport 1.53% (2/131) 4.7 0.002693 0.016635
GO:0061659 ubiquitin-like protein ligase activity 4.58% (6/131) 2.11 0.002802 0.017244
GO:1901363 heterocyclic compound binding 35.88% (47/131) 0.54 0.002907 0.017821
GO:0009643 photosynthetic acclimation 1.53% (2/131) 4.64 0.002931 0.017905
GO:0014070 response to organic cyclic compound 11.45% (15/131) 1.16 0.003018 0.018367
GO:0002690 positive regulation of leukocyte chemotaxis 1.53% (2/131) 4.58 0.003179 0.018721
GO:0034703 cation channel complex 1.53% (2/131) 4.58 0.003179 0.018721
GO:1902326 positive regulation of chlorophyll biosynthetic process 1.53% (2/131) 4.58 0.003179 0.018721
GO:1904368 regulation of sclerenchyma cell differentiation 1.53% (2/131) 4.58 0.003179 0.018721
GO:1904369 positive regulation of sclerenchyma cell differentiation 1.53% (2/131) 4.58 0.003179 0.018721
GO:0009657 plastid organization 5.34% (7/131) 1.88 0.0031 0.018798
GO:0007275 multicellular organism development 13.74% (18/131) 1.03 0.003129 0.018903
GO:0015698 inorganic anion transport 3.82% (5/131) 2.35 0.003158 0.018935
GO:1900055 regulation of leaf senescence 3.82% (5/131) 2.35 0.003158 0.018935
GO:0043412 macromolecule modification 20.61% (27/131) 0.78 0.003264 0.01915
GO:0097159 organic cyclic compound binding 35.88% (47/131) 0.53 0.003357 0.019216
GO:0002833 positive regulation of response to biotic stimulus 6.87% (9/131) 1.58 0.003384 0.019235
GO:0009738 abscisic acid-activated signaling pathway 4.58% (6/131) 2.06 0.003374 0.019245
GO:0008270 zinc ion binding 6.11% (8/131) 1.71 0.003357 0.019282
GO:0008486 diphosphoinositol-polyphosphate diphosphatase activity 0.76% (1/131) 8.22 0.003351 0.019318
GO:0071544 diphosphoinositol polyphosphate catabolic process 0.76% (1/131) 8.22 0.003351 0.019318
GO:0002177 manchette 0.76% (1/131) 8.22 0.003351 0.019318
GO:0120103 centriolar subdistal appendage 0.76% (1/131) 8.22 0.003351 0.019318
GO:0007615 anesthesia-resistant memory 0.76% (1/131) 8.22 0.003351 0.019318
GO:0002687 positive regulation of leukocyte migration 1.53% (2/131) 4.52 0.003437 0.019399
GO:0040008 regulation of growth 10.69% (14/131) 1.19 0.003427 0.019413
GO:0009617 response to bacterium 12.98% (17/131) 1.04 0.003613 0.020253
GO:0006817 phosphate ion transport 2.29% (3/131) 3.3 0.003604 0.020277
GO:1901141 regulation of lignin biosynthetic process 3.05% (4/131) 2.68 0.003636 0.020314
GO:0048736 appendage development 1.53% (2/131) 4.47 0.003703 0.020481
GO:1901465 positive regulation of tetrapyrrole biosynthetic process 1.53% (2/131) 4.47 0.003703 0.020481
GO:0015743 malate transport 1.53% (2/131) 4.47 0.003703 0.020481
GO:0000578 embryonic axis specification 2.29% (3/131) 3.28 0.003717 0.020487
GO:0009968 negative regulation of signal transduction 8.4% (11/131) 1.37 0.003775 0.020736
GO:0045892 negative regulation of DNA-templated transcription 8.4% (11/131) 1.36 0.003864 0.021157
GO:0050778 positive regulation of immune response 6.11% (8/131) 1.67 0.003883 0.021189
GO:1902679 negative regulation of RNA biosynthetic process 8.4% (11/131) 1.35 0.004096 0.021982
GO:1903507 negative regulation of nucleic acid-templated transcription 8.4% (11/131) 1.35 0.004096 0.021982
GO:1900425 negative regulation of defense response to bacterium 3.05% (4/131) 2.64 0.00407 0.021987
GO:0009790 embryo development 9.16% (12/131) 1.28 0.004044 0.021993
GO:0042538 hyperosmotic salinity response 3.82% (5/131) 2.26 0.004065 0.022035
GO:0044281 small molecule metabolic process 17.56% (23/131) 0.84 0.004165 0.02228
GO:0002688 regulation of leukocyte chemotaxis 1.53% (2/131) 4.36 0.004265 0.022595
GO:0010117 photoprotection 1.53% (2/131) 4.36 0.004265 0.022595
GO:0009957 epidermal cell fate specification 1.53% (2/131) 4.36 0.004265 0.022595
GO:0007389 pattern specification process 8.4% (11/131) 1.34 0.004313 0.022776
GO:0009793 embryo development ending in seed dormancy 7.63% (10/131) 1.42 0.004401 0.023163
GO:0009934 regulation of meristem structural organization 2.29% (3/131) 3.19 0.004437 0.023204
GO:0048571 long-day photoperiodism 2.29% (3/131) 3.19 0.004437 0.023204
GO:0009723 response to ethylene 5.34% (7/131) 1.76 0.004944 0.025776
GO:0009890 negative regulation of biosynthetic process 9.92% (13/131) 1.18 0.00503 0.026139
GO:0016020 membrane 38.93% (51/131) 0.47 0.005071 0.026271
GO:0006851 mitochondrial calcium ion transmembrane transport 1.53% (2/131) 4.22 0.005176 0.026564
GO:0032024 positive regulation of insulin secretion 1.53% (2/131) 4.22 0.005176 0.026564
GO:0099106 ion channel regulator activity 1.53% (2/131) 4.22 0.005176 0.026564
GO:0034702 ion channel complex 1.53% (2/131) 4.18 0.005498 0.027953
GO:0140678 molecular function inhibitor activity 1.53% (2/131) 4.18 0.005498 0.027953
GO:0015556 C4-dicarboxylate transmembrane transporter activity 1.53% (2/131) 4.18 0.005498 0.027953
GO:0009646 response to absence of light 3.82% (5/131) 2.15 0.005547 0.028111
GO:0006714 sesquiterpenoid metabolic process 2.29% (3/131) 3.06 0.005665 0.028447
GO:0009567 double fertilization forming a zygote and endosperm 2.29% (3/131) 3.06 0.005665 0.028447
GO:0023056 positive regulation of signaling 7.63% (10/131) 1.37 0.005641 0.028502
GO:0016247 channel regulator activity 1.53% (2/131) 4.13 0.005829 0.029182
GO:0006082 organic acid metabolic process 13.74% (18/131) 0.94 0.00597 0.029704
GO:0009644 response to high light intensity 3.05% (4/131) 2.48 0.005957 0.029729
GO:0010647 positive regulation of cell communication 7.63% (10/131) 1.35 0.006122 0.030371
GO:0031305 integral component of mitochondrial inner membrane 1.53% (2/131) 4.09 0.006169 0.03051
GO:0071669 plant-type cell wall organization or biogenesis 6.11% (8/131) 1.56 0.006197 0.030554
GO:0016740 transferase activity 23.66% (31/131) 0.65 0.006275 0.030846
GO:0010558 negative regulation of macromolecule biosynthetic process 9.16% (12/131) 1.19 0.006475 0.031735
GO:1990170 stress response to cadmium ion 1.53% (2/131) 4.05 0.006518 0.031849
GO:0071543 diphosphoinositol polyphosphate metabolic process 0.76% (1/131) 7.22 0.006692 0.03203
GO:0003420 regulation of growth plate cartilage chondrocyte proliferation 0.76% (1/131) 7.22 0.006692 0.03203
GO:0034972 histone H3-R26 methylation 0.76% (1/131) 7.22 0.006692 0.03203
GO:0035642 histone methyltransferase activity (H3-R17 specific) 0.76% (1/131) 7.22 0.006692 0.03203
GO:0120141 regulation of ecdysone receptor-mediated signaling pathway 0.76% (1/131) 7.22 0.006692 0.03203
GO:0120142 positive regulation of ecdysone receptor-mediated signaling pathway 0.76% (1/131) 7.22 0.006692 0.03203
GO:2000241 regulation of reproductive process 9.92% (13/131) 1.13 0.006626 0.03228
GO:0009658 chloroplast organization 4.58% (6/131) 1.84 0.006877 0.032823
GO:1901135 carbohydrate derivative metabolic process 9.92% (13/131) 1.12 0.006901 0.032841
GO:0005509 calcium ion binding 3.82% (5/131) 2.08 0.006963 0.03304
GO:0051241 negative regulation of multicellular organismal process 6.87% (9/131) 1.41 0.007209 0.034106
GO:0006835 dicarboxylic acid transport 2.29% (3/131) 2.92 0.007418 0.034996
GO:0009832 plant-type cell wall biogenesis 3.82% (5/131) 2.05 0.007459 0.035086
GO:0009846 pollen germination 3.05% (4/131) 2.38 0.007532 0.035328
GO:0043436 oxoacid metabolic process 12.98% (17/131) 0.93 0.007604 0.035563
GO:0015291 secondary active transmembrane transporter activity 4.58% (6/131) 1.81 0.007685 0.035844
GO:0002685 regulation of leukocyte migration 1.53% (2/131) 3.9 0.007999 0.037202
GO:0019538 protein metabolic process 21.37% (28/131) 0.67 0.008207 0.038059
GO:0032104 regulation of response to extracellular stimulus 2.29% (3/131) 2.86 0.008309 0.03821
GO:0032107 regulation of response to nutrient levels 2.29% (3/131) 2.86 0.008309 0.03821
GO:0015629 actin cytoskeleton 2.29% (3/131) 2.86 0.008309 0.03821
GO:0032501 multicellular organismal process 26.72% (35/131) 0.57 0.008525 0.039092
GO:0051239 regulation of multicellular organismal process 14.5% (19/131) 0.85 0.008625 0.039437
GO:0009787 regulation of abscisic acid-activated signaling pathway 5.34% (7/131) 1.6 0.008689 0.039512
GO:0009798 axis specification 2.29% (3/131) 2.84 0.008683 0.039593
GO:0052315 phytoalexin biosynthetic process 2.29% (3/131) 2.83 0.008873 0.040237
GO:0051253 negative regulation of RNA metabolic process 8.4% (11/131) 1.2 0.008916 0.040318
GO:0052314 phytoalexin metabolic process 2.29% (3/131) 2.82 0.009066 0.040884
GO:0002793 positive regulation of peptide secretion 1.53% (2/131) 3.79 0.0092 0.041151
GO:0031304 intrinsic component of mitochondrial inner membrane 1.53% (2/131) 3.79 0.0092 0.041151
GO:0090277 positive regulation of peptide hormone secretion 1.53% (2/131) 3.79 0.0092 0.041151
GO:0003006 developmental process involved in reproduction 22.14% (29/131) 0.64 0.009277 0.041379
GO:0009403 toxin biosynthetic process 2.29% (3/131) 2.78 0.009659 0.042734
GO:0051592 response to calcium ion 2.29% (3/131) 2.78 0.009659 0.042734
GO:0010822 positive regulation of mitochondrion organization 1.53% (2/131) 3.76 0.009618 0.042782
GO:0032502 developmental process 36.64% (48/131) 0.44 0.00993 0.043815
GO:0005886 plasma membrane 21.37% (28/131) 0.65 0.010053 0.044003
GO:0005310 dicarboxylic acid transmembrane transporter activity 1.53% (2/131) 3.73 0.010043 0.044076
GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity 0.76% (1/131) 6.64 0.010021 0.044097
GO:0050921 positive regulation of chemotaxis 1.53% (2/131) 3.7 0.010477 0.045734
GO:0031327 negative regulation of cellular biosynthetic process 9.16% (12/131) 1.1 0.010535 0.045865
GO:0099402 plant organ development 10.69% (14/131) 1.0 0.010563 0.045865
GO:0016311 dephosphorylation 3.82% (5/131) 1.92 0.010629 0.046032
GO:0046887 positive regulation of hormone secretion 1.53% (2/131) 3.67 0.010918 0.04716
GO:0071554 cell wall organization or biogenesis 8.4% (11/131) 1.15 0.010957 0.047202
GO:0009991 response to extracellular stimulus 8.4% (11/131) 1.15 0.011112 0.047744
GO:0050796 regulation of insulin secretion 1.53% (2/131) 3.64 0.011368 0.048718
GO:0090693 plant organ senescence 5.34% (7/131) 1.52 0.011596 0.049561
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_161 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_205 0.012 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_232 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (131) (download table)

InterPro Domains

GO Terms

Family Terms