Coexpression cluster: Cluster_256 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006397 mRNA processing 21.15% (11/52) 3.96 0.0 0.0
GO:0008380 RNA splicing 19.23% (10/52) 4.36 0.0 0.0
GO:0000398 mRNA splicing, via spliceosome 15.38% (8/52) 4.96 0.0 0.0
GO:0006396 RNA processing 30.77% (16/52) 2.83 0.0 0.0
GO:0005681 spliceosomal complex 17.31% (9/52) 4.43 0.0 0.0
GO:0016070 RNA metabolic process 34.62% (18/52) 2.54 0.0 0.0
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 15.38% (8/52) 4.65 0.0 0.0
GO:0000375 RNA splicing, via transesterification reactions 15.38% (8/52) 4.62 0.0 0.0
GO:0005684 U2-type spliceosomal complex 13.46% (7/52) 5.09 0.0 0.0
GO:0090304 nucleic acid metabolic process 38.46% (20/52) 2.22 0.0 0.0
GO:0140513 nuclear protein-containing complex 26.92% (14/52) 2.82 0.0 1e-06
GO:0045292 mRNA cis splicing, via spliceosome 9.62% (5/52) 6.02 0.0 1e-06
GO:1990904 ribonucleoprotein complex 23.08% (12/52) 3.01 0.0 2e-06
GO:0071013 catalytic step 2 spliceosome 11.54% (6/52) 4.97 0.0 3e-06
GO:0016071 mRNA metabolic process 21.15% (11/52) 3.08 0.0 4e-06
GO:0006139 nucleobase-containing compound metabolic process 38.46% (20/52) 1.93 0.0 4e-06
GO:0022618 ribonucleoprotein complex assembly 13.46% (7/52) 3.97 0.0 1.8e-05
GO:0071826 ribonucleoprotein complex subunit organization 13.46% (7/52) 3.89 0.0 2.5e-05
GO:0071007 U2-type catalytic step 2 spliceosome 7.69% (4/52) 5.65 1e-06 6.6e-05
GO:0016072 rRNA metabolic process 13.46% (7/52) 3.52 2e-06 0.000121
GO:0071005 U2-type precatalytic spliceosome 7.69% (4/52) 5.2 5e-06 0.000177
GO:0071006 U2-type catalytic step 1 spliceosome 5.77% (3/52) 6.55 4e-06 0.00018
GO:0071012 catalytic step 1 spliceosome 5.77% (3/52) 6.55 4e-06 0.00018
GO:0003723 RNA binding 26.92% (14/52) 2.05 4e-06 0.000182
GO:0046483 heterocycle metabolic process 38.46% (20/52) 1.55 4e-06 0.000191
GO:0034641 cellular nitrogen compound metabolic process 38.46% (20/52) 1.5 7e-06 0.000277
GO:0071011 precatalytic spliceosome 7.69% (4/52) 5.0 8e-06 0.000282
GO:0006725 cellular aromatic compound metabolic process 40.38% (21/52) 1.42 9e-06 0.00031
GO:0034660 ncRNA metabolic process 17.31% (9/52) 2.67 1e-05 0.000345
GO:0042254 ribosome biogenesis 7.69% (4/52) 4.84 1.2e-05 0.000394
GO:0030532 small nuclear ribonucleoprotein complex 7.69% (4/52) 4.76 1.5e-05 0.000475
GO:0120114 Sm-like protein family complex 7.69% (4/52) 4.72 1.7e-05 0.000511
GO:0006364 rRNA processing 11.54% (6/52) 3.44 1.9e-05 0.000553
GO:0034470 ncRNA processing 15.38% (8/52) 2.77 2e-05 0.000573
GO:0034512 box C/D RNA binding 3.85% (2/52) 7.75 3.6e-05 0.000989
GO:1901360 organic cyclic compound metabolic process 40.38% (21/52) 1.29 3.6e-05 0.001017
GO:0042078 germ-line stem cell division 3.85% (2/52) 7.55 4.8e-05 0.001282
GO:0022613 ribonucleoprotein complex biogenesis 7.69% (4/52) 4.21 6.6e-05 0.001701
GO:0000350 generation of catalytic spliceosome for second transesterification step 3.85% (2/52) 7.09 9.5e-05 0.002383
GO:0001651 dense fibrillar component 3.85% (2/52) 6.97 0.000114 0.002718
GO:0043228 non-membrane-bounded organelle 26.92% (14/52) 1.61 0.00012 0.002738
GO:0043232 intracellular non-membrane-bounded organelle 26.92% (14/52) 1.61 0.00012 0.002738
GO:0048024 regulation of mRNA splicing, via spliceosome 7.69% (4/52) 4.01 0.000112 0.002757
GO:1905216 positive regulation of RNA binding 3.85% (2/52) 6.75 0.000156 0.003486
GO:1905214 regulation of RNA binding 3.85% (2/52) 6.55 0.000206 0.004487
GO:0000389 mRNA 3'-splice site recognition 3.85% (2/52) 6.47 0.000233 0.004865
GO:0031428 box C/D RNP complex 3.85% (2/52) 6.47 0.000233 0.004865
GO:0003676 nucleic acid binding 34.62% (18/52) 1.25 0.000243 0.004972
GO:0043021 ribonucleoprotein complex binding 7.69% (4/52) 3.7 0.000258 0.005156
GO:0016604 nuclear body 11.54% (6/52) 2.73 0.000275 0.005295
GO:0050684 regulation of mRNA processing 7.69% (4/52) 3.68 0.00027 0.005307
GO:0043484 regulation of RNA splicing 7.69% (4/52) 3.61 0.000327 0.006168
GO:0005730 nucleolus 15.38% (8/52) 2.14 0.000406 0.00751
GO:0007548 sex differentiation 3.85% (2/52) 5.75 0.000642 0.011658
GO:0003724 RNA helicase activity 5.77% (3/52) 4.12 0.000705 0.012578
GO:0045621 positive regulation of lymphocyte differentiation 3.85% (2/52) 5.65 0.000737 0.012915
GO:1902494 catalytic complex 17.31% (9/52) 1.83 0.000826 0.014217
GO:0008186 ATP-dependent activity, acting on RNA 5.77% (3/52) 3.97 0.000948 0.015764
GO:0043073 germ cell nucleus 3.85% (2/52) 5.47 0.000948 0.016027
GO:0043170 macromolecule metabolic process 42.31% (22/52) 0.92 0.001037 0.01696
GO:0000348 mRNA branch site recognition 1.92% (1/52) 9.55 0.00133 0.017401
GO:0070210 Rpd3L-Expanded complex 1.92% (1/52) 9.55 0.00133 0.017401
GO:0062064 box C/D snoRNP complex binding 1.92% (1/52) 9.55 0.00133 0.017401
GO:0062065 box H/ACA snoRNP complex binding 1.92% (1/52) 9.55 0.00133 0.017401
GO:0034699 response to luteinizing hormone 1.92% (1/52) 9.55 0.00133 0.017401
GO:0071373 cellular response to luteinizing hormone stimulus 1.92% (1/52) 9.55 0.00133 0.017401
GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors 1.92% (1/52) 9.55 0.00133 0.017401
GO:0045583 regulation of cytotoxic T cell differentiation 1.92% (1/52) 9.55 0.00133 0.017401
GO:0045585 positive regulation of cytotoxic T cell differentiation 1.92% (1/52) 9.55 0.00133 0.017401
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex 3.85% (2/52) 5.2 0.001377 0.017541
GO:0045619 regulation of lymphocyte differentiation 3.85% (2/52) 5.2 0.001377 0.017541
GO:0043024 ribosomal small subunit binding 3.85% (2/52) 5.34 0.001122 0.018045
GO:0016607 nuclear speck 7.69% (4/52) 3.11 0.001194 0.018588
GO:0032991 protein-containing complex 28.85% (15/52) 1.22 0.001183 0.018712
GO:0016074 sno(s)RNA metabolic process 3.85% (2/52) 5.13 0.001514 0.019037
GO:0000974 Prp19 complex 3.85% (2/52) 5.27 0.001246 0.019104
GO:1902107 positive regulation of leukocyte differentiation 3.85% (2/52) 5.23 0.001311 0.019483
GO:1903708 positive regulation of hemopoiesis 3.85% (2/52) 5.23 0.001311 0.019483
GO:0006376 mRNA splice site selection 3.85% (2/52) 4.97 0.001883 0.023087
GO:0071014 post-mRNA release spliceosomal complex 3.85% (2/52) 4.97 0.001883 0.023087
GO:0015030 Cajal body 3.85% (2/52) 4.94 0.001961 0.023752
GO:0065003 protein-containing complex assembly 13.46% (7/52) 1.95 0.002079 0.024876
GO:0030515 snoRNA binding 3.85% (2/52) 4.88 0.002123 0.025089
GO:1903311 regulation of mRNA metabolic process 7.69% (4/52) 2.88 0.002152 0.025128
GO:0046540 U4/U6 x U5 tri-snRNP complex 3.85% (2/52) 4.83 0.00229 0.026433
GO:1901655 cellular response to ketone 3.85% (2/52) 4.8 0.002376 0.026491
GO:0097526 spliceosomal tri-snRNP complex 3.85% (2/52) 4.8 0.002376 0.026491
GO:0005654 nucleoplasm 15.38% (8/52) 1.75 0.002334 0.026619
GO:1904869 regulation of protein localization to Cajal body 1.92% (1/52) 8.55 0.002659 0.026891
GO:1904871 positive regulation of protein localization to Cajal body 1.92% (1/52) 8.55 0.002659 0.026891
GO:1904627 response to phorbol 13-acetate 12-myristate 1.92% (1/52) 8.55 0.002659 0.026891
GO:1904628 cellular response to phorbol 13-acetate 12-myristate 1.92% (1/52) 8.55 0.002659 0.026891
GO:0033979 box H/ACA RNA metabolic process 1.92% (1/52) 8.55 0.002659 0.026891
GO:0043609 regulation of carbon utilization 1.92% (1/52) 8.55 0.002659 0.026891
GO:0000481 maturation of 5S rRNA 1.92% (1/52) 8.55 0.002659 0.026891
GO:1902038 positive regulation of hematopoietic stem cell differentiation 1.92% (1/52) 8.55 0.002659 0.026891
GO:0044877 protein-containing complex binding 11.54% (6/52) 2.12 0.002473 0.027259
GO:1902105 regulation of leukocyte differentiation 3.85% (2/52) 4.65 0.002924 0.029274
GO:0007369 gastrulation 3.85% (2/52) 4.62 0.003021 0.029935
GO:0017145 stem cell division 3.85% (2/52) 4.55 0.00332 0.032565
GO:0017069 snRNA binding 3.85% (2/52) 4.51 0.003526 0.034247
GO:0106349 snRNA methylation 1.92% (1/52) 7.97 0.003986 0.035546
GO:1905380 regulation of snRNA transcription by RNA polymerase II 1.92% (1/52) 7.97 0.003986 0.035546
GO:1905382 positive regulation of snRNA transcription by RNA polymerase II 1.92% (1/52) 7.97 0.003986 0.035546
GO:1990437 snRNA 2'-O-methylation 1.92% (1/52) 7.97 0.003986 0.035546
GO:1990438 U6 2'-O-snRNA methylation 1.92% (1/52) 7.97 0.003986 0.035546
GO:0097177 mitochondrial ribosome binding 1.92% (1/52) 7.97 0.003986 0.035546
GO:1990483 Clr6 histone deacetylase complex I'' 1.92% (1/52) 7.97 0.003986 0.035546
GO:0030519 snoRNP binding 1.92% (1/52) 7.97 0.003986 0.035546
GO:0048546 digestive tract morphogenesis 1.92% (1/52) 7.97 0.003986 0.035546
GO:0043933 protein-containing complex organization 13.46% (7/52) 1.75 0.004489 0.03967
GO:0001650 fibrillar center 3.85% (2/52) 4.29 0.004765 0.041737
GO:0036093 germ cell proliferation 1.92% (1/52) 7.55 0.005311 0.043417
GO:0071362 cellular response to ether 1.92% (1/52) 7.55 0.005311 0.043417
GO:0072752 cellular response to rapamycin 1.92% (1/52) 7.55 0.005311 0.043417
GO:0120259 7SK snRNP 1.92% (1/52) 7.55 0.005311 0.043417
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity 1.92% (1/52) 7.55 0.005311 0.043417
GO:0030622 U4atac snRNA binding 1.92% (1/52) 7.55 0.005311 0.043417
GO:0031538 negative regulation of anthocyanin metabolic process 1.92% (1/52) 7.55 0.005311 0.043417
GO:0051591 response to cAMP 3.85% (2/52) 4.2 0.005386 0.043663
GO:0051251 positive regulation of lymphocyte activation 3.85% (2/52) 4.23 0.005133 0.044563
GO:0002696 positive regulation of leukocyte activation 3.85% (2/52) 4.11 0.006041 0.048575
GO:0000494 box C/D RNA 3'-end processing 1.92% (1/52) 7.23 0.006634 0.048934
GO:0033967 box C/D RNA metabolic process 1.92% (1/52) 7.23 0.006634 0.048934
GO:0034963 box C/D RNA processing 1.92% (1/52) 7.23 0.006634 0.048934
GO:2000634 regulation of primary miRNA processing 1.92% (1/52) 7.23 0.006634 0.048934
GO:0001093 TFIIB-class transcription factor binding 1.92% (1/52) 7.23 0.006634 0.048934
GO:1901506 regulation of acylglycerol transport 1.92% (1/52) 7.23 0.006634 0.048934
GO:1901508 positive regulation of acylglycerol transport 1.92% (1/52) 7.23 0.006634 0.048934
GO:1905883 regulation of triglyceride transport 1.92% (1/52) 7.23 0.006634 0.048934
GO:1905885 positive regulation of triglyceride transport 1.92% (1/52) 7.23 0.006634 0.048934
GO:0005690 U4atac snRNP 1.92% (1/52) 7.23 0.006634 0.048934
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_106 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_162 0.02 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_221 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_222 0.02 Orthogroups with 8 Potato genotypes Compare
Sequences (52) (download table)

InterPro Domains

GO Terms

Family Terms