Coexpression cluster: Cluster_108 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009506 plasmodesma 35.0% (49/140) 2.16 0.0 0.0
GO:0070161 anchoring junction 35.71% (50/140) 2.15 0.0 0.0
GO:0005911 cell-cell junction 35.0% (49/140) 2.13 0.0 0.0
GO:0030054 cell junction 36.43% (51/140) 1.97 0.0 0.0
GO:0031225 anchored component of membrane 15.0% (21/140) 3.87 0.0 0.0
GO:0031224 intrinsic component of membrane 35.0% (49/140) 1.93 0.0 0.0
GO:0046658 anchored component of plasma membrane 11.43% (16/140) 4.06 0.0 0.0
GO:0031226 intrinsic component of plasma membrane 15.0% (21/140) 3.24 0.0 0.0
GO:0016020 membrane 58.57% (82/140) 1.05 0.0 0.0
GO:0071555 cell wall organization 17.86% (25/140) 2.69 0.0 0.0
GO:0071554 cell wall organization or biogenesis 20.0% (28/140) 2.41 0.0 0.0
GO:0045229 external encapsulating structure organization 19.29% (27/140) 2.45 0.0 0.0
GO:0009664 plant-type cell wall organization 11.43% (16/140) 3.17 0.0 0.0
GO:0005576 extracellular region 20.0% (28/140) 2.11 0.0 0.0
GO:0071669 plant-type cell wall organization or biogenesis 13.57% (19/140) 2.71 0.0 0.0
GO:0045488 pectin metabolic process 10.0% (14/140) 3.31 0.0 0.0
GO:0030312 external encapsulating structure 20.0% (28/140) 2.01 0.0 0.0
GO:0010393 galacturonan metabolic process 10.0% (14/140) 3.29 0.0 0.0
GO:0048358 mucilage pectin biosynthetic process 5.0% (7/140) 5.38 0.0 0.0
GO:0051286 cell tip 8.57% (12/140) 3.55 0.0 0.0
GO:0005976 polysaccharide metabolic process 13.57% (19/140) 2.54 0.0 0.0
GO:0090404 pollen tube tip 7.14% (10/140) 3.99 0.0 0.0
GO:0060187 cell pole 8.57% (12/140) 3.49 0.0 0.0
GO:0010183 pollen tube guidance 7.14% (10/140) 3.93 0.0 0.0
GO:0050918 positive chemotaxis 7.14% (10/140) 3.93 0.0 0.0
GO:0035838 growing cell tip 7.14% (10/140) 3.89 0.0 0.0
GO:0045490 pectin catabolic process 6.43% (9/140) 4.21 0.0 0.0
GO:0009932 cell tip growth 11.43% (16/140) 2.74 0.0 0.0
GO:0000272 polysaccharide catabolic process 8.57% (12/140) 3.34 0.0 0.0
GO:0009505 plant-type cell wall 12.86% (18/140) 2.49 0.0 0.0
GO:0016052 carbohydrate catabolic process 10.0% (14/140) 2.94 0.0 0.0
GO:0048363 mucilage pectin metabolic process 5.0% (7/140) 4.78 0.0 0.0
GO:0005618 cell wall 17.86% (25/140) 1.93 0.0 0.0
GO:0005975 carbohydrate metabolic process 16.43% (23/140) 2.02 0.0 1e-06
GO:0030570 pectate lyase activity 3.57% (5/140) 5.86 0.0 1e-06
GO:0004672 protein kinase activity 17.14% (24/140) 1.91 0.0 1e-06
GO:0009624 response to nematode 6.43% (9/140) 3.73 0.0 1e-06
GO:0006935 chemotaxis 7.86% (11/140) 3.24 0.0 1e-06
GO:0016301 kinase activity 18.57% (26/140) 1.78 0.0 1e-06
GO:0046777 protein autophosphorylation 12.86% (18/140) 2.27 0.0 2e-06
GO:0006468 protein phosphorylation 15.71% (22/140) 1.97 0.0 2e-06
GO:0042330 taxis 7.86% (11/140) 3.16 0.0 2e-06
GO:0110165 cellular anatomical entity 81.43% (114/140) 0.44 0.0 2e-06
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides 3.57% (5/140) 5.59 0.0 2e-06
GO:0016773 phosphotransferase activity, alcohol group as acceptor 17.14% (24/140) 1.78 0.0 4e-06
GO:0090406 pollen tube 7.86% (11/140) 3.04 0.0 4e-06
GO:0080092 regulation of pollen tube growth 6.43% (9/140) 3.47 0.0 5e-06
GO:0005575 cellular_component 81.43% (114/140) 0.42 0.0 5e-06
GO:0071840 cellular component organization or biogenesis 35.71% (50/140) 1.04 0.0 5e-06
GO:0009987 cellular process 73.57% (103/140) 0.49 0.0 6e-06
GO:0030427 site of polarized growth 7.14% (10/140) 3.18 0.0 6e-06
GO:0040011 locomotion 7.86% (11/140) 2.95 0.0 7e-06
GO:0016772 transferase activity, transferring phosphorus-containing groups 18.57% (26/140) 1.64 0.0 7e-06
GO:0008150 biological_process 81.43% (114/140) 0.4 0.0 9e-06
GO:0016310 phosphorylation 16.43% (23/140) 1.74 0.0 1.1e-05
GO:0048046 apoplast 11.43% (16/140) 2.21 0.0 1.3e-05
GO:0016043 cellular component organization 33.57% (47/140) 1.04 0.0 1.3e-05
GO:0048359 mucilage metabolic process involved in seed coat development 5.71% (8/140) 3.56 0.0 1.3e-05
GO:0010769 regulation of cell morphogenesis involved in differentiation 6.43% (9/140) 3.17 1e-06 2.3e-05
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds 7.86% (11/140) 2.74 1e-06 2.6e-05
GO:0005886 plasma membrane 29.29% (41/140) 1.1 1e-06 3.1e-05
GO:0016324 apical plasma membrane 6.43% (9/140) 3.11 1e-06 3.1e-05
GO:0098590 plasma membrane region 9.29% (13/140) 2.37 2e-06 4.1e-05
GO:0003824 catalytic activity 52.14% (73/140) 0.66 2e-06 5.8e-05
GO:0010191 mucilage metabolic process 5.71% (8/140) 3.25 2e-06 5.8e-05
GO:0051510 regulation of unidimensional cell growth 7.14% (10/140) 2.77 2e-06 6.1e-05
GO:0009826 unidimensional cell growth 11.43% (16/140) 1.99 3e-06 7.4e-05
GO:0010068 protoderm histogenesis 3.57% (5/140) 4.49 3e-06 7.5e-05
GO:0010152 pollen maturation 4.29% (6/140) 3.92 3e-06 7.6e-05
GO:0098588 bounding membrane of organelle 20.0% (28/140) 1.35 4e-06 8.6e-05
GO:0051722 protein C-terminal methylesterase activity 2.14% (3/140) 6.54 4e-06 8.8e-05
GO:0045489 pectin biosynthetic process 5.0% (7/140) 3.44 4e-06 9.7e-05
GO:0046910 pectinesterase inhibitor activity 3.57% (5/140) 4.38 4e-06 0.000102
GO:0030599 pectinesterase activity 3.57% (5/140) 4.34 5e-06 0.000116
GO:0005774 vacuolar membrane 15.0% (21/140) 1.6 6e-06 0.000124
GO:0022604 regulation of cell morphogenesis 7.86% (11/140) 2.45 6e-06 0.000141
GO:0051723 protein methylesterase activity 2.14% (3/140) 6.25 7e-06 0.000158
GO:1902066 regulation of cell wall pectin metabolic process 3.57% (5/140) 4.09 1.2e-05 0.000257
GO:0016021 integral component of membrane 19.29% (27/140) 1.27 1.7e-05 0.00035
GO:0016798 hydrolase activity, acting on glycosyl bonds 7.86% (11/140) 2.14 4.6e-05 0.00095
GO:0106310 protein serine kinase activity 6.43% (9/140) 2.45 4.6e-05 0.000957
GO:0034219 carbohydrate transmembrane transport 3.57% (5/140) 3.68 4.8e-05 0.000969
GO:0000902 cell morphogenesis 12.14% (17/140) 1.59 5.3e-05 0.001068
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 3.57% (5/140) 3.61 5.9e-05 0.001172
GO:0050896 response to stimulus 55.0% (77/140) 0.51 6.8e-05 0.00133
GO:0031090 organelle membrane 25.0% (35/140) 0.96 6.8e-05 0.001342
GO:0004857 enzyme inhibitor activity 5.71% (8/140) 2.56 7.3e-05 0.001395
GO:0060560 developmental growth involved in morphogenesis 11.43% (16/140) 1.61 7.4e-05 0.001402
GO:0010065 primary meristem tissue development 3.57% (5/140) 3.54 7.5e-05 0.001411
GO:0140096 catalytic activity, acting on a protein 21.43% (30/140) 1.05 8.5e-05 0.00158
GO:0048508 embryonic meristem development 3.57% (5/140) 3.48 9.1e-05 0.001675
GO:0010053 root epidermal cell differentiation 4.29% (6/140) 3.04 9.6e-05 0.001744
GO:0022414 reproductive process 30.71% (43/140) 0.8 0.000105 0.001888
GO:0006796 phosphate-containing compound metabolic process 18.57% (26/140) 1.14 0.000106 0.001889
GO:0015144 carbohydrate transmembrane transporter activity 3.57% (5/140) 3.39 0.000122 0.002148
GO:0005199 structural constituent of cell wall 1.43% (2/140) 6.8 0.000126 0.002203
GO:0006793 phosphorus metabolic process 18.57% (26/140) 1.11 0.00014 0.002389
GO:0120025 plasma membrane bounded cell projection 10.0% (14/140) 1.67 0.000139 0.00239
GO:0052689 carboxylic ester hydrolase activity 5.71% (8/140) 2.39 0.000159 0.002688
GO:0009846 pollen germination 4.29% (6/140) 2.87 0.000185 0.003091
GO:2000603 regulation of secondary growth 2.14% (3/140) 4.71 0.000207 0.003388
GO:2000605 positive regulation of secondary growth 2.14% (3/140) 4.71 0.000207 0.003388
GO:0044419 biological process involved in interspecies interaction between organisms 27.14% (38/140) 0.82 0.000251 0.004038
GO:0048589 developmental growth 12.14% (17/140) 1.4 0.000251 0.004071
GO:0051015 actin filament binding 3.57% (5/140) 3.16 0.000257 0.004087
GO:0043207 response to external biotic stimulus 27.86% (39/140) 0.8 0.000273 0.004308
GO:0021700 developmental maturation 6.43% (9/140) 2.09 0.000295 0.004609
GO:0051707 response to other organism 26.43% (37/140) 0.82 0.000301 0.004655
GO:0015075 ion transmembrane transporter activity 9.29% (13/140) 1.63 0.00032 0.004902
GO:0042995 cell projection 10.0% (14/140) 1.55 0.000325 0.004937
GO:0016049 cell growth 11.43% (16/140) 1.42 0.000329 0.00495
GO:0008064 regulation of actin polymerization or depolymerization 2.86% (4/140) 3.59 0.000359 0.005319
GO:0030832 regulation of actin filament length 2.86% (4/140) 3.59 0.000359 0.005319
GO:0004674 protein serine/threonine kinase activity 10.0% (14/140) 1.53 0.000377 0.005527
GO:0009607 response to biotic stimulus 27.86% (39/140) 0.77 0.000386 0.005613
GO:0015749 monosaccharide transmembrane transport 2.86% (4/140) 3.56 0.00039 0.005619
GO:0003674 molecular_function 73.57% (103/140) 0.3 0.000431 0.006157
GO:0015318 inorganic molecular entity transmembrane transporter activity 7.86% (11/140) 1.76 0.000444 0.006298
GO:1900457 regulation of brassinosteroid mediated signaling pathway 3.57% (5/140) 2.93 0.000533 0.007427
GO:0090558 plant epidermis development 2.86% (4/140) 3.44 0.00053 0.00744
GO:0040007 growth 12.86% (18/140) 1.25 0.000553 0.007647
GO:0048507 meristem development 3.57% (5/140) 2.91 0.000574 0.007863
GO:0000271 polysaccharide biosynthetic process 5.0% (7/140) 2.29 0.000615 0.008366
GO:0042579 microbody 6.43% (9/140) 1.94 0.000625 0.008423
GO:0010054 trichoblast differentiation 1.43% (2/140) 5.67 0.000686 0.009029
GO:0005215 transporter activity 11.43% (16/140) 1.33 0.000676 0.009047
GO:0055085 transmembrane transport 10.71% (15/140) 1.38 0.000686 0.009097
GO:0008324 cation transmembrane transporter activity 7.14% (10/140) 1.78 0.000741 0.009678
GO:0022603 regulation of anatomical structure morphogenesis 8.57% (12/140) 1.58 0.00075 0.009716
GO:0090627 plant epidermal cell differentiation 4.29% (6/140) 2.49 0.000759 0.00976
GO:0001558 regulation of cell growth 7.14% (10/140) 1.76 0.000805 0.010279
GO:0005777 peroxisome 5.71% (8/140) 2.03 0.000832 0.010463
GO:0110053 regulation of actin filament organization 2.86% (4/140) 3.27 0.000827 0.01048
GO:0022890 inorganic cation transmembrane transporter activity 6.43% (9/140) 1.88 0.000847 0.010573
GO:0005615 extracellular space 5.0% (7/140) 2.2 0.000902 0.011171
GO:0051119 sugar transmembrane transporter activity 2.86% (4/140) 3.23 0.00091 0.011188
GO:0016787 hydrolase activity 19.29% (27/140) 0.91 0.000935 0.01141
GO:0009860 pollen tube growth 5.71% (8/140) 2.0 0.000967 0.011722
GO:0008643 carbohydrate transport 3.57% (5/140) 2.7 0.001098 0.013117
GO:0006885 regulation of pH 2.86% (4/140) 3.16 0.001092 0.013141
GO:0048878 chemical homeostasis 11.43% (16/140) 1.26 0.001122 0.013214
GO:0022857 transmembrane transporter activity 10.71% (15/140) 1.31 0.001116 0.013233
GO:0016835 carbon-oxygen lyase activity 4.29% (6/140) 2.37 0.001147 0.013411
GO:0019932 second-messenger-mediated signaling 3.57% (5/140) 2.67 0.001216 0.014119
GO:0030834 regulation of actin filament depolymerization 2.14% (3/140) 3.83 0.001262 0.014556
GO:0051017 actin filament bundle assembly 2.14% (3/140) 3.8 0.001325 0.015178
GO:0022804 active transmembrane transporter activity 7.14% (10/140) 1.66 0.001352 0.015373
GO:0016051 carbohydrate biosynthetic process 5.71% (8/140) 1.91 0.001405 0.015878
GO:0030234 enzyme regulator activity 7.14% (10/140) 1.65 0.001421 0.015945
GO:0003779 actin binding 3.57% (5/140) 2.6 0.001479 0.016487
GO:0061572 actin filament bundle organization 2.14% (3/140) 3.73 0.001526 0.016897
GO:0007015 actin filament organization 2.86% (4/140) 2.97 0.001792 0.019709
GO:0055067 monovalent inorganic cation homeostasis 4.29% (6/140) 2.23 0.0019 0.020763
GO:1990110 callus formation 2.86% (4/140) 2.89 0.002184 0.02356
GO:0098660 inorganic ion transmembrane transport 5.71% (8/140) 1.81 0.002171 0.02357
GO:0048768 root hair cell tip growth 2.14% (3/140) 3.54 0.002239 0.023995
GO:0005507 copper ion binding 3.57% (5/140) 2.46 0.002279 0.024272
GO:0019722 calcium-mediated signaling 2.86% (4/140) 2.86 0.002345 0.024819
GO:0008645 hexose transmembrane transport 2.14% (3/140) 3.48 0.002515 0.026447
GO:0015291 secondary active transmembrane transporter activity 5.0% (7/140) 1.94 0.002532 0.026456
GO:0010483 pollen tube reception 2.14% (3/140) 3.46 0.002612 0.027121
GO:0034220 ion transmembrane transport 7.14% (10/140) 1.53 0.002637 0.027213
GO:0009620 response to fungus 12.14% (17/140) 1.09 0.002709 0.02779
GO:0042641 actomyosin 1.43% (2/140) 4.67 0.002807 0.028619
GO:0009605 response to external stimulus 30.0% (42/140) 0.59 0.002898 0.029369
GO:0012505 endomembrane system 5.0% (7/140) 1.89 0.003001 0.03023
GO:1901879 regulation of protein depolymerization 2.14% (3/140) 3.35 0.003239 0.032235
GO:0055082 cellular chemical homeostasis 5.71% (8/140) 1.72 0.003232 0.03236
GO:0015751 arabinose transmembrane transport 1.43% (2/140) 4.54 0.003338 0.032641
GO:0042882 L-arabinose transmembrane transport 1.43% (2/140) 4.54 0.003338 0.032641
GO:0042900 arabinose transmembrane transporter activity 1.43% (2/140) 4.54 0.003338 0.032641
GO:0033303 quercetin O-glucoside biosynthetic process 0.71% (1/140) 8.13 0.003582 0.033643
GO:0033330 kaempferol O-glucoside biosynthetic process 0.71% (1/140) 8.13 0.003582 0.033643
GO:0033834 kaempferol 3-O-galactosyltransferase activity 0.71% (1/140) 8.13 0.003582 0.033643
GO:0080059 flavonol 3-O-arabinosyltransferase activity 0.71% (1/140) 8.13 0.003582 0.033643
GO:0102454 cyanidin 3-O-galactosyltransferase activity 0.71% (1/140) 8.13 0.003582 0.033643
GO:0102479 quercetin 3-O-beta:-D-galactosyltransferase activity 0.71% (1/140) 8.13 0.003582 0.033643
GO:0005358 high-affinity glucose:proton symporter activity 1.43% (2/140) 4.48 0.00362 0.033815
GO:0032881 regulation of polysaccharide metabolic process 3.57% (5/140) 2.31 0.003512 0.034143
GO:0016829 lyase activity 6.43% (9/140) 1.56 0.00376 0.034931
GO:0005356 glucose:proton symporter activity 1.43% (2/140) 4.42 0.003913 0.035748
GO:0015578 mannose transmembrane transporter activity 1.43% (2/140) 4.42 0.003913 0.035748
GO:0055055 D-glucose:proton symporter activity 1.43% (2/140) 4.42 0.003913 0.035748
GO:0045330 aspartyl esterase activity 1.43% (2/140) 4.37 0.004216 0.038101
GO:0055056 D-glucose transmembrane transporter activity 1.43% (2/140) 4.37 0.004216 0.038101
GO:0042592 homeostatic process 11.43% (16/140) 1.06 0.004282 0.038285
GO:0043227 membrane-bounded organelle 46.43% (65/140) 0.4 0.004272 0.038403
GO:0032535 regulation of cellular component size 3.57% (5/140) 2.22 0.004627 0.041155
GO:0032956 regulation of actin cytoskeleton organization 2.86% (4/140) 2.58 0.004691 0.041278
GO:0009738 abscisic acid-activated signaling pathway 4.29% (6/140) 1.96 0.004666 0.041282
GO:0048764 trichoblast maturation 2.14% (3/140) 3.16 0.004752 0.041383
GO:0048765 root hair cell differentiation 2.14% (3/140) 3.16 0.004752 0.041383
GO:0015078 proton transmembrane transporter activity 3.57% (5/140) 2.18 0.005095 0.044142
GO:0047911 galacturan 1,4-alpha-galacturonidase activity 1.43% (2/140) 4.22 0.005188 0.044714
GO:0098772 molecular function regulator activity 7.14% (10/140) 1.38 0.005484 0.047019
GO:0032502 developmental process 37.14% (52/140) 0.46 0.005549 0.04734
GO:0006812 cation transport 6.43% (9/140) 1.47 0.005652 0.047967
GO:0015145 monosaccharide transmembrane transporter activity 2.14% (3/140) 3.05 0.005802 0.048503
GO:0051494 negative regulation of cytoskeleton organization 2.14% (3/140) 3.05 0.005802 0.048503
GO:1902904 negative regulation of supramolecular fiber organization 2.14% (3/140) 3.05 0.005802 0.048503
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_140 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_159 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_13 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_107 0.01 Orthogroups with 8 Potato genotypes Compare
Sequences (140) (download table)

InterPro Domains

GO Terms

Family Terms